Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00308 ATGTCACTTTCTCCCCACCTGTTTCTCCTTCTTTTCACCTTAACATCCCTCACCACCGCCGCAATCGCCTCCGTTGAATGCCCTCTCAACTTCACCGTCCTCCGCCAGTTCTCCCAGGGTTCCTCCATTTCCCGCTCCGACGAATGCCAATACATCCGCCTTGGTCTCCGCCTCGTTCTTTCCCAGTACCTTAAACTCACCGGCTCCTTCTTGCCCCCGGTGAACTCTTCCGATTCATGCTGGAATTCTTACCAATCGATTGTGAATGTTTCTTGGCCGAATTTCGACATTCGGAGCTCTTGTGGGTTTCAAACCGGGTGGATTTCTCAAGGCTGTATGAACATAACTACCAAATCGGAGTTTGACAGAATCGTTCCTAAATCTGCCCTTGATGGTGTTGTTGCGAACTGTAATCAATCGCTTGAAAATGGTTCCCCTTGTGCCTCGTGCACGACGAGGCTCGCGATCGTTCAGGCATCGTTCTTGACTGGTCCGTCGATTGGAAATGTCACTGATTGCCCCGCATATCCATCGATCTACACGGCGGCTTTCGTGAATCATTTCGGACCCACCGATTGGGGAACTGCGAAATGTTTATTCTCACTGAATCCTTCTTCGTCGGGGAATTCGAGAAGCAAGAAGCGGAACACGGTGGTGTTAGTTGTTCTAATTTGTTGTGGCGTTGCGGCGGCGGTGGCGGCGGTTGCAGGTGGGTTGTTTTTCTGGCGGAAACAGGGGAAAGTCAAGAAGAACGATAGAATTGGTAGAGTTGAAACAGGGTTGGGTTCTGGATTGGAATCGATTAGTGCAAGCACTAGTTTGGTGAAGTTCACATTCGATGAAATCAAGAGGGCAACAAGGAATTTTAGTAGAGATAACATAATTGGGAGAGGGGGTTATGGGAATGTGTATAAAGGGGTTCTATTAGATGATTCTGAAGTTGCATTGAAGAGGTTTAAGAACTGTTCTGCAGCAGGGGATGCCATTTTTGCTCATGAAGTTGAGGTAATTTCTAGTGTTAGGCATGTTAATCTTGTAGCTTTAAGAGGATATTGTATTGCAACCACTCCAATGGAAGGTCACCAGAGGATAATTGTGTGTGATTTGATGAAGAATGGGAGTCTTTATGACCATTTGTTTGGGTTTTCAGATCAGAGATTGAGTTGGCCTATTAGGCAAAAGATTGCTCTTGGCACAGCTAGAGGATTGGCTTATCTGCATTACGGAGCTCAGCCTTCCATTATCCATAGAGATATCAAAGCCAGCAACATTCTTTTGGATGAAAATTTTGAACCTAAGGTAGCTGACTTTGGTTTAGCTAAGTTTACTCCAGAAGGAATGACTCATTTGAGCACAAGAGTAGCTGGAACTATGGGGTATGTGGCGCCTGAGTATGCCTTATACGGCCAATTGACTGAGAGGAGTGATGTGTATAGCTTTGGAGTTGTTCTACTCGAGCTATTGAGCGGGAGGAAGGCACTTGGGGTGAGGAGCCATGACAGCCAACCATTTCTAGTGACTGATTGGGCTTGGACTTTGGTTAGGGAACAAAAGGCAATGGATGTTATTGAAGAAGGCATGCCAGAGCTGGGTTCTCCGGAGGTTGTTGAAAAGTATGTATTGATTGCTGTCCTTTGTTCACATCCCCAGCTCTATGCCAGACCATCAATGGATCAAGTAGTGAAAATGCTTGAAACTGAGTTATCTGTTCCTTCAATCCCAGAGAGACCCATCCCTTTAGTTGCTGATATTGATGAAATTGAGAGATCTATGAGTAGTAGTAGTTCGAAATCGCCCTCAAGGGTGATGAAGCGTCTGGCTCGGATCTCTGAAACTAATCTTCAGTGGCATTTGTAA 1857 45.99 MSLSPHLFLLLFTLTSLTTAAIASVECPLNFTVLRQFSQGSSISRSDECQYIRLGLRLVLSQYLKLTGSFLPPVNSSDSCWNSYQSIVNVSWPNFDIRSSCGFQTGWISQGCMNITTKSEFDRIVPKSALDGVVANCNQSLENGSPCASCTTRLAIVQASFLTGPSIGNVTDCPAYPSIYTAAFVNHFGPTDWGTAKCLFSLNPSSSGNSRSKKRNTVVLVVLICCGVAAAVAAVAGGLFFWRKQGKVKKNDRIGRVETGLGSGLESISASTSLVKFTFDEIKRATRNFSRDNIIGRGGYGNVYKGVLLDDSEVALKRFKNCSAAGDAIFAHEVEVISSVRHVNLVALRGYCIATTPMEGHQRIIVCDLMKNGSLYDHLFGFSDQRLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDENFEPKVADFGLAKFTPEGMTHLSTRVAGTMGYVAPEYALYGQLTERSDVYSFGVVLLELLSGRKALGVRSHDSQPFLVTDWAWTLVREQKAMDVIEEGMPELGSPEVVEKYVLIAVLCSHPQLYARPSMDQVVKMLETELSVPSIPERPIPLVADIDEIERSMSSSSSKSPSRVMKRLARISETNLQWHL 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4007837 4012312 + MELO3C005042.2.1 Cme12g00308 343525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00308 618 Pfam SPARK 23 159 IPR043891 -
Cme12g00308 618 SMART serkin_6 289 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00308 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
Cme12g00308 618 Gene3D Phosphorylase Kinase; domain 1 261 368 - -
Cme12g00308 618 Gene3D Transferase(Phosphotransferase) domain 1 370 579 - -
Cme12g00308 618 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RKF3-RELATED 14 598 - -
Cme12g00308 618 ProSitePatterns Protein kinases ATP-binding region signature. 295 317 IPR017441 GO:0005524
Cme12g00308 618 SUPERFAMILY Protein kinase-like (PK-like) 266 565 IPR011009 -
Cme12g00308 618 CDD STKc_IRAK 295 565 - -
Cme12g00308 618 ProSiteProfiles Protein kinase domain profile. 289 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00308 618 Pfam Protein kinase domain 290 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00308 618 PANTHER OS01G0750732 PROTEIN 14 598 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01252 Cme-Chr6:10227291 Cme12g00308 Cme-Chr12:4007837 6.11E-110 dispersed
Cme12g00308 Cme-Chr12:4007837 Cme04g02712 Cme-Chr4:32554892 5.95E-86 dispersed
Cme12g00308 Cme-Chr12:4007837 Cme02g01367 Cme-Chr2:19773821 6.05E-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65297 PF00069 Pkinase 2.50E-40 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00308 - - csv:101222675 1105.89