Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g00332 | ATGAAGAAAAGTGAAGAAGCAAATACGGCGTCGGCGGTGGTGGTGATGGGTAGTACTCAGCCGTGTGCGGCTTGTAAAATTCTCCGGCGGAGATGCCGAGAGAATTGTGAATTAGGGCCGTATTTTCCTCCAATGGAACCTCTCAAATTCACTATTGCCCATAGAGTCTTTGGTGCTAGCAACATTATCAAGTTGCTTCAGAATCTTCCGAAATCGCAAAGAGCAGATGCTGTGAACAGCATGGTATATGAAGCAAGTGCAAGAATAAGAGATCCTATTTATGGATGTGCGGGCTCAATTTTCCATCTCCAAAGACAAATAAATGACCTACAAATAGAGTTAGCCAAGGCTCAAGCAGAGGTTCTCAGAATGCATTGTCAACAAGCCAATTTAATGACTCTAATTTGCAAGGAATTGGGTCAAATGCCAGAACCACCCATGCATGACCATTACAACATTGCTAGCCCTCAAGGTTATTACTCCTATTCATACTTATTTGAGGAGAGTAATGTTTTGGAGCCCCTGTGGACTTGA | 534 | 43.26 | MKKSEEANTASAVVVMGSTQPCAACKILRRRCRENCELGPYFPPMEPLKFTIAHRVFGASNIIKLLQNLPKSQRADAVNSMVYEASARIRDPIYGCAGSIFHLQRQINDLQIELAKAQAEVLRMHCQQANLMTLICKELGQMPEPPMHDHYNIASPQGYYSYSYLFEESNVLEPLWT | 177 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 4561282 | 4562282 | - | MELO3C005013.2.1 | Cme12g00332 | 343549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g00332 | 177 | Pfam | Lateral organ boundaries (LOB) domain | 21 | 118 | IPR004883 | - | |
| Cme12g00332 | 177 | ProSiteProfiles | LOB domain profile. | 20 | 121 | IPR004883 | - | |
| Cme12g00332 | 177 | Coils | Coil | 100 | 127 | - | - | |
| Cme12g00332 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 12 | 176 | - | - | |
| Cme12g00332 | 177 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 1 | 12 | 176 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cme11g01769 | Cme12g00332 | CCT | |
| Cme11g01769 | Cme12g00332 | ECH |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme12g00332 | Cme-Chr12:4561282 | Cme12g00980 | Cme-Chr12:17143350 | 1.22E-45 | dispersed | |
| Cme12g00332 | Cme-Chr12:4561282 | Cme12g00335 | Cme-Chr12:4617591 | 1.49E-81 | proximal | |
| Cme11g01769 | Cme-Chr11:25921359 | Cme12g00332 | Cme-Chr12:4561282 | 2.39E-66 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42292 | PF03195 | LOB | 2.00E-38 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g00332 | - | - | csv:101222021 | 319.701 |