Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00335 ATGACGTCATCTCTTCTTCTTCATTTCGTCTCTATATATATTATATTCTTCATTCTTCTTCACAGCCAAAACCAACTTCATTTCTCTCTTTCTACCCAGTCTAAAATGGAGTCTAGGGAGGTAAAATCCAGCCCGACTTCAACACTCCTTTCTCAGTCCCCGTCGCCGTCTCCTTCACCGCCCCCGACTGTTCAGGCCCCCGTGGTGGTCAGTCCATGTGCGGCGTGCAAGATTCTGCGGCGGAGATGCGCAGAGAAATGCGTATTGGCGCCTTATTTTCCTCCCTCTGATCCTCTCAAGTTCACCATTGCTCACCGTATCTTCGGCGCTAGCAACATCATCAAATTGCTTCTGGATCTTCCAGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTATATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGTCAGCTTCAAAAACAGATAAACGAATTGCAAGCAGAGCTAGCCAAGACACAAGCTGAGCTTGTCAATATCCATTGCCACCAAACCAATTTGGTGGCTCTGATTTGCAAGGAATTAGCCCAAACGCCACCACCGATGTCATCATTGTCGCTCCTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACTCCTCAAAGCTACCAAGGGTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 720 46.94 MTSSLLLHFVSIYIIFFILLHSQNQLHFSLSTQSKMESREVKSSPTSTLLSQSPSPSPSPPPTVQAPVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRIFGASNIIKLLLDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQTNLVALICKELAQTPPPMSSLSLLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4617591 4619051 + MELO3C005009.2.1 Cme12g00335 343552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00335 239 Coils Coil 151 178 - -
Cme12g00335 239 MobiDBLite consensus disorder prediction 41 65 - -
Cme12g00335 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 60 238 - -
Cme12g00335 239 Pfam Lateral organ boundaries (LOB) domain 72 169 IPR004883 -
Cme12g00335 239 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 60 238 - -
Cme12g00335 239 ProSiteProfiles LOB domain profile. 71 172 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01769 Cme-Chr11:25921359 Cme12g00335 Cme-Chr12:4617591 1.60E-79 dispersed
Cme12g00335 Cme-Chr12:4617591 Cme12g00980 Cme-Chr12:17143350 6.15E-48 dispersed
Cme12g00332 Cme-Chr12:4561282 Cme12g00335 Cme-Chr12:4617591 1.49E-81 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42293 PF03195 LOB 6.10E-40 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00335 - - csv:101222262 337.806