Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00349 ATGATTGTAGCAGCAGGGCAGAGGTCCAATGGCGGAATTAGGAGCGGAGAATTGGCGGATTTTATCGGGCAAGTGGTGGTCGGACGGTGGTTTTCGCTTTTCGCTTCGTTCCTTGTAATGACCGGTGCCGGTGGAGTTTATTTGTTTGCTTATTACTCTAGAGACATCAAGACGACGCTCCAATGTGATCAAACGACATTGAACAGAATTGGGTTTTATAAAGATTTGGGATCCAATGTCGGCGTTATTGCCGGACTTCTGGCGGAGGTGGCGCCCACTTGGCTTGTTCTTCTCATCGGCGCCGCCTTCAATTTTATCGGATACTTTAAGATTTGGCAAGCCGTTACCGGAAAAATTGTCCGCCCCACAGTCGCCTTCTTTTGCTTTTACATTATGATTGGAGCTAACTCTCAAAATTTTGCTAACACAGGAGTGCTAGTGACGTGCGTGAAGAACTTTCCAGAAAGAAGAGGAGTAATGTTGGGGCTTCTAAAGGGCTTCGTGGGTCTAAGTGGAGCCATAATGACTCAACTTTACATCGCCATTTACGGCCACGATACAAAATCTCTTATTCTTCTAATTGCTTGGTTCCCTTCTATAGTCTCGTTGATCTTCGTCTACACTATCCGAGAAATCAAATTCGTAAAACACCCAAATGAATTCAGAGTTTTCGTTCAATTCCTTTGTGTCACCGTCCTCTTAGCTCTCTTACTCACCGCCTTAATCTTCGTTCAAAAACGTGTCCATTTCGACCAATCCGCTCATATCGCCATTGTCGCTGCAATCCTTGCTCTCCTCTTTGTTCCATTGTTAATCGCCATTAGAGAAGAAGTCGTTATTTGGAATCTCAACAAACGGACCCCAATTTCAAACCCTTTTATCAGAATCGGAATCGAAAGCTCACAACCAAAACCCCCAATTCATTCACCCTCAACCCCACAACATCCACTTCAAACCCAACCCACATCATGTTTCTCCAACATTTTCAACAAACCCGAACGAGGCGAGGATTACACAGTTCTTCAAGCCATTTTCAGTATCGATATGCTTATTATATGCTCCACTATGTTGATCGGCGTCGGTGCGAGTTTAACCGCCATTGATAATCTAGGTCAAATCGGTGAAGCACAAGGCTACCCATCTGAAACAATCAACTTATTCGTTTCATTAATAAGTATTTCCAATTTCACTGGTAGAATCTTTTCTGGGTTTGTCTCTGAAATCCTGCTTGAGAAATTCCAATTCCCTCGTCCATTGATGCTCACATTGATTCTTCTGATTTCCTCTCTTGGACATCTTTTAGTAGCTTTCCCATTTGATGATTCACTTTACCTTGCATCAATCATAATAGGATTCTCAATGGGTTCACAAGTCCCATTACATTTCGCTATGATTTCAGAAATTTTTGGCCTTAAACATTACTCGACATTGTTCAATTTTGGACAACTCTCTTGTCCAATTGGGTCTTATATTCTGAATGTTATGGTAACTGGGAAATTGTATGATGAAGTAGCTCGAATTGGGAGTAATCCAAACAAGTCACATTGTGTAGGGACTCATTGTTATGAACAATCGTTCTTGATTTTGGCTGGATTAACGTTTATTGTAGCGATGATATCATTGATTTTGGTGCAAAGGACCAGGGAATTTTATAGAGGGGATATATACAAGAAATTCAAGGAAGATATGGAAACTTTGAAGACAGAAGTGGAGTTTTATAGAGTGGATGAGAAGAGAACTAGGATTGGGAATTTACTTGTTGATAAACATTCTATTAATTTCAAGAAATGA 1791 41.15 MIVAAGQRSNGGIRSGELADFIGQVVVGRWFSLFASFLVMTGAGGVYLFAYYSRDIKTTLQCDQTTLNRIGFYKDLGSNVGVIAGLLAEVAPTWLVLLIGAAFNFIGYFKIWQAVTGKIVRPTVAFFCFYIMIGANSQNFANTGVLVTCVKNFPERRGVMLGLLKGFVGLSGAIMTQLYIAIYGHDTKSLILLIAWFPSIVSLIFVYTIREIKFVKHPNEFRVFVQFLCVTVLLALLLTALIFVQKRVHFDQSAHIAIVAAILALLFVPLLIAIREEVVIWNLNKRTPISNPFIRIGIESSQPKPPIHSPSTPQHPLQTQPTSCFSNIFNKPERGEDYTVLQAIFSIDMLIICSTMLIGVGASLTAIDNLGQIGEAQGYPSETINLFVSLISISNFTGRIFSGFVSEILLEKFQFPRPLMLTLILLISSLGHLLVAFPFDDSLYLASIIIGFSMGSQVPLHFAMISEIFGLKHYSTLFNFGQLSCPIGSYILNVMVTGKLYDEVARIGSNPNKSHCVGTHCYEQSFLILAGLTFIVAMISLILVQRTREFYRGDIYKKFKEDMETLKTEVEFYRVDEKRTRIGNLLVDKHSINFKK 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 4837076 4839068 - MELO3C004992.2.1 Cme12g00349 343566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00349 596 Coils Coil 556 576 - -
Cme12g00349 596 Gene3D MFS general substrate transporter like domains 326 552 IPR036259 -
Cme12g00349 596 CDD MFS_Mch1p_like 28 537 - -
Cme12g00349 596 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4 14 567 - -
Cme12g00349 596 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 14 567 - -
Cme12g00349 596 Pfam Nodulin-like 29 274 IPR010658 -
Cme12g00349 596 SUPERFAMILY MFS general substrate transporter 232 549 IPR036259 -
Cme12g00349 596 SUPERFAMILY MFS general substrate transporter 49 213 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00349 Cme-Chr12:4837076 Cme12g00372 Cme-Chr12:5205738 0 dispersed
Cme12g00349 Cme-Chr12:4837076 Cme12g00351 Cme-Chr12:4856458 6.27E-63 proximal
Cme12g00349 Cme-Chr12:4837076 Cme12g00352 Cme-Chr12:4878170 1.18E-101 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00349 - - csv:101202941 1026.16