Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00392 ATGGAGAAATCTGGGTGTGGTCGCGATGGAATTTTCAGGTCTTTACGGCCTCCACTTGTCTTTCCTAAAGATCCCAATCTCTCCATGATCTCTTTCCTCTTCCGAAATTTATTGTCTTATCCTAATAGACTAGCCATTGTTGATGCGGAATCTTCATATTCTGTGTCGTATTCCCAGCTTAAAGCCTTGGCAATTAGGCTATCCAATGGTTTGATCCAATTGGGTATTGAGAAAAATGACGTGGTGATGATTTTTGCTCCAAATTCAGTTCAACTCTCCATTTGTTTCATTGGGGTTATTGCCATTGGGGCTATTGTAACTACTTGTAATCCTGTCTACACGGTTTCTGAGCTAACTAAGCAAGTTAGAGATGCTAAGCCTAAACTCGTGATATCTGTTGCTGAATTGTGGGATAAAGTGAAGGATCTAAACATCCCAACTGTGTTACTAGACCAGAAAATTCCTTCAGCAATTCATTCTTCTAAAATATTGTGTTTCAATGATTTGGTGAACATGGCTGGTGATAAATCTGGGTCTGAGTTTCCAATTGTTGGGGTGAAGCAGAGTGATACAGCTGCACTTCTGTATTCATCAGGAACAACAGGAGCTAGTAAGGGTGTGATTTTGACTCACAGAAACTTCATAGCATCTTCTTTGATGATAACAATGGATCAGACGTTTAGTGGAGAGGAACATGGCGTATTTCTGAACTTCTTGCCAATGTTTCATGTGTTTGGATTGGCTTGTATAACATATGCTCAGCTGCAGAAAGGAAACACCATTGTCTCTATGCCAAAGTTTAATCTTGAGAAAGCCCTGTGGGCAGTGGAGAAGTATAAGGTGACAGATCTGTGGGTTGTGCCGCCTGTTGTGCTTGCTTTGGCAAAGCAGAGTCTGGTGAAGAAATACAACCTTTCATCAGTGAAGCGTGTCGGTTCAGGGGCTGCACCTCTTGGGAGGGAATTAATGGAGGAATGTGCTAATAACATTCCCAGTGCTGTGGTTATCCAGGGTTATGGTATGACTGAGACTTGTGGAGTTGTTGCGTTGGAGAATCCAGCAGTTGGCAAACGAAATTCTGGTTCAGCTGGAACACTTGCCTCTGGTGTTGAGGCTAAAATAGTCAGTGTGGATACTCTAAAGCCTCTACCTCCTAATCAATATGGAGAGATACATGTTCGAGGACCAAACATGATGCTCGGTTATTTCAACAATCCTGAAGCCACCAAGCAAACTATTGATAAATATGGATGGGTGCATACTGGAGACCTTGGATACTTCGATGAAAACGGTCAGCTTTATGTTGTCGACCGAATCAAGGAACTCATCAAGTACAAAGGTTTTCAGGTTGCACCAGCTGAGCTTGAAGCACTGCTGGTTTCTCACCCGGAGATACTAGATGCTGTTGTCATCCCCTACCCTGATGAAGAAGCTGGAGAAGTTCCAATTGCTTATATTGTTCGATCTGCCAATAGTTCTTTGACTGAAGAGGACATCCTTAAATTCATTGCTGATCAGGTTTCTCCTTACAAAAGGTTAAGAAGAGTGACATTCATCAGCAATGTCCCCAAGTCTGTTTCTGGTAAAATTCTGAGGAGAGAACTCATTGAGAAAGTA 1617 42.3 MEKSGCGRDGIFRSLRPPLVFPKDPNLSMISFLFRNLLSYPNRLAIVDAESSYSVSYSQLKALAIRLSNGLIQLGIEKNDVVMIFAPNSVQLSICFIGVIAIGAIVTTCNPVYTVSELTKQVRDAKPKLVISVAELWDKVKDLNIPTVLLDQKIPSAIHSSKILCFNDLVNMAGDKSGSEFPIVGVKQSDTAALLYSSGTTGASKGVILTHRNFIASSLMITMDQTFSGEEHGVFLNFLPMFHVFGLACITYAQLQKGNTIVSMPKFNLEKALWAVEKYKVTDLWVVPPVVLALAKQSLVKKYNLSSVKRVGSGAAPLGRELMEECANNIPSAVVIQGYGMTETCGVVALENPAVGKRNSGSAGTLASGVEAKIVSVDTLKPLPPNQYGEIHVRGPNMMLGYFNNPEATKQTIDKYGWVHTGDLGYFDENGQLYVVDRIKELIKYKGFQVAPAELEALLVSHPEILDAVVIPYPDEEAGEVPIAYIVRSANSSLTEEDILKFIADQVSPYKRLRRVTFISNVPKSVSGKILRRELIEKV 539
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5642969 5646196 - MELO3C004955.2.1 Cme12g00392 343609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00392 539 CDD 4CL 21 535 - -
Cme12g00392 539 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Cme12g00392 539 Pfam AMP-binding enzyme C-terminal domain 454 529 IPR025110 -
Cme12g00392 539 Pfam AMP-binding enzyme 38 445 IPR000873 -
Cme12g00392 539 Gene3D - 10 440 IPR042099 -
Cme12g00392 539 PANTHER 4-COUMARATE:COA LIGASE-LIKE PROTEIN 5 537 - -
Cme12g00392 539 Gene3D - 441 539 IPR045851 -
Cme12g00392 539 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 5 537 - -
Cme12g00392 539 SUPERFAMILY Acetyl-CoA synthetase-like 17 538 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01441 Cme-Chr5:23772562 Cme12g00392 Cme-Chr12:5642969 6.40E-130 dispersed
Cme10g00674 Cme-Chr10:4281476 Cme12g00392 Cme-Chr12:5642969 1.71E-131 dispersed
Cme11g00620 Cme-Chr11:7131535 Cme12g00392 Cme-Chr12:5642969 3.24E-130 dispersed
Cme12g00392 Cme-Chr12:5642969 Cme12g01605 Cme-Chr12:23303176 4.13E-139 dispersed
Cme12g01607 Cme-Chr12:23307847 Cme12g00392 Cme-Chr12:5642969 4.05E-130 dispersed
Cme04g01469 Cme-Chr4:20987851 Cme12g00392 Cme-Chr12:5642969 5.52E-94 transposed
Cme06g02062 Cme-Chr6:25951045 Cme12g00392 Cme-Chr12:5642969 6.77E-40 transposed
Cme07g00071 Cme-Chr7:444827 Cme12g00392 Cme-Chr12:5642969 6.88E-155 transposed
Cme10g00113 Cme-Chr10:788039 Cme12g00392 Cme-Chr12:5642969 9.74E-126 transposed
Cme12g00392 Cme-Chr12:5642969 Cme04g02507 Cme-Chr4:31408827 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00392 K01904 - csv:101220141 1017.3