Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00402 ATGACCCGTTTCATGGAATCGGAAAAGCTCTTAATTTCACGAGGAAACCCTAGAAATTCTGCATATCCATCTGACCGCCCAATCCCCACCACCAGCGGCAGGACTATGCCCAATGAGTTGCCACAAAAGCCTCCCCCTTCTATAGCTCACCGGTTTAGAGCTCAGCTTAAGCAGCGGGATGATGAATTTAGGGTTTCTGGCCATGATGTTGTACCCCCTCCTACCGCTGAGGATATTGTGCAGTTGTATGACCTCATGTTGTCGGAGCTCACTTTTAATTCGAAGCCCATCATTACCGATCTCACTGTTCTTGCTGATGAGCAGAGAGAACATGGGAAGGGCATTGCCGACTTAATTTGTGCGCGGATTCTCGAGGTTCCAGTTGACCAAAAACTTCCTTCATTATATCTATTAGACAGCATCGTTAAGAATGTTGGGCACGAGTACATCAGTTATTTCTCATCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCACAATGCAATGCGCCACCTCTTTGGGACTTGGGCAACTGTGTTTCCACCATCCATCATTCGGAAGATCGAAGCTCAACTTTCTCAGCTAACAGCACAAGAGTCATCAGGTTTGACATCCTCGAGGGCTTCTGAATCTCCTAGGCCAACTCATGGTATTCATGTCAATCCAAAATACTTGCGCCAGCTGGAACACTCAGTGGTGGATAAACATACCCAAGATTCAAGAGGGACCTCAGCTATAAAAGTTCATGATAAAAAGCTTGCTTCTGGATATGAAGAGTATGACTATGATCATGCGGATGCTCTTGAACATGGTGGAGCTCAAGAATTCCATTCAATGGGAAGCATGGGCCATGATTCTTTTTCCCTTGGAACAAATAAAGCAAATGTAAAGCTAGCAAAATCATCTCTGTCTTCAAGAATTGGACACCATAGACCTCTACAATCACTTGGTGATGAACTTGAATCAGTCAGAGCCTCACCCTCGCAGAATGTATATGATTATGAAGGTTCTAAAATTCTTGATAGAAATGAGGATACCAATAAATGGAGGAGAAAGCAATATCCTGACGATAATATGAATGGACTTGAAAATACTTCTTCATATAATATTAGAAATGGACATGCACTTGAGGGACCAAGAGCTTTAATTGAAGCATATGGAAGTGATAAAGGAAAAGGTTATTTAAACGACAATCCACCTCAAGCTGAACATTTTTCTATTAGTGGTATAGACAACAAGGCAACTCCGGTAACATGGCAGAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGATAGAGGCAGAAATAATGATATGTTGAAACCAACTGTCCCACCTTCAAGATTTAGGACAAGATCAGGATTTGAAAGATCAAATGCTATGCCTATAGAGCCAGGAATGAGAAGCAATTGGTCTAGTCAGGTTCAGCTACCGGGTATTGATTCCTCCATAGTTATTGAAGATGTGGTCCATTCAACACCTGATATTTGGAAAATGCACAATCACATTTCTCAGACATCTCAGAACCTCATGAACAATAAAGGACCGGGAAGAAATTTCCAGATGCCTATGTTGGGGAGAGGCATAACTTCCTCTGGTGGTGAGAAGATGTCACCCTACGGTGACAAGCTTTTGACCAATGATGCTTTACATAGGCCCACTAACATTGCTTCGAGATTGGGTTCTTCTGGTCTTGACTCTAACATGGAGTCGCAATCAATTGTACAATCTATGGGCCCAAGGCATCCTCTGAATCTTTCTAACTCTTGCCCACCCTCCAGGCCTCCTGTTTTTCCTGTACCAAGACACAATACAAGTCAGTTTGAGTCTCTAAATGGTAGCAATTCTTTCATGAATTCTGCAAATAGGACTTTTTTGCCTGAGCAGCAGATGAATAACTTGAGAAATAAGGAGCTAAGTCTTACAACTAAGTCACCACAAGTTGGCAACCAACATACTGGGCATATTCCTTTAACTCGGGGAAACCAATTGCAGTCCATGCCTTTAAAGCCGCAATTTCTACCATCTCAGGACATGCAAGATAATTTTAGTGGATCAGCAGTACCTCCAGTGTTACCACATTTAATTGCACCATCTTTGAGTCAAGGATACATTTCACAAGGACATCGCCCTGCTAATAGTGAGGGTTTGTCAAGTTCTGCCCCTATTGGACAATGGAATTTGTCTGTTCATAATAGCTCCAGTAACCCTTTGCATTTACAAGGAGGGCCGCTGCCACCTCTTCCACCTGGGCCTCATCCTACTTCTGGTCCAACTATACCTATCTCTCAAAAGGTTCCTGGTCAGCAACCTGGAACTGCAATTTCTGGCCTCATAAGTTCTCTCATGGCCCGGGGTTTAATCTCATTGAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTCAAGGTGCGACATGAATCAGCAATAACTGCTCTATATGCTGATCTTCCTCGACAATGCATGACCTGTGGTCTTCGATTCAAGACCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAATCGTATGTCAAAAAGTAGGAAGCAAAAGCCTTCACGCAAATGGTTTGTAAGTATTAGCATGTGGCTTAGCGGTGCAGAGGCTCTGGGAACGGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTCGTTGTAGAGAAAAAAGATGATGAAGAACTGGCTGTTCCTGCTGACGAGGATCAGAAGACATGTGCATTATGCGGAGAACCTTTCGAGGATTTTTACAGTGATGAAACAGAGGAGTGGATGTATCGGGGTGCTGTCTATATGAATGCACCTGATGGACAAACAGCCGGCATGGATAGATCTCAATTAGGGCCCATAGTGCATGCTAAATGCAGGACTGAAACTAATGTGGTTCCCTCTGAAAGTTTTGACCAAGATGAAGGGGGAGTTAGTGAAGACGGTAATCGAAGAAAACGATTGCGGAGCTAG 3024 43.42 MTRFMESEKLLISRGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFRVSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARILEVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWATVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKHTQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFSLGTNKANVKLAKSSLSSRIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNKWRRKQYPDDNMNGLENTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSISGIDNKATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMPIEPGMRSNWSSQVQLPGIDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQMPMLGRGITSSGGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRHPLNLSNSCPPSRPPVFPVPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLTTKSPQVGNQHTGHIPLTRGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQGYISQGHRPANSEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQKVPGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVPGFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQTAGMDRSQLGPIVHAKCRTETNVVPSESFDQDEGGVSEDGNRRKRLRS 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 5850408 5858067 - MELO3C004944.2.1 Cme12g00402 343619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00402 1007 ProSitePatterns Zinc finger C2H2 type domain signature. 841 861 IPR013087 -
Cme12g00402 1007 Gene3D - 73 201 IPR008942 -
Cme12g00402 1007 SMART 558neu5 78 200 IPR006569 -
Cme12g00402 1007 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 42 982 - -
Cme12g00402 1007 ProSiteProfiles CID domain profile. 75 203 IPR006569 -
Cme12g00402 1007 SUPERFAMILY ENTH/VHS domain 75 203 IPR008942 -
Cme12g00402 1007 MobiDBLite consensus disorder prediction 1 45 - -
Cme12g00402 1007 MobiDBLite consensus disorder prediction 441 465 - -
Cme12g00402 1007 Pfam CID domain 87 194 IPR006569 -
Cme12g00402 1007 MobiDBLite consensus disorder prediction 979 1007 - -
Cme12g00402 1007 MobiDBLite consensus disorder prediction 206 226 - -
Cme12g00402 1007 MobiDBLite consensus disorder prediction 13 38 - -
Cme12g00402 1007 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 42 982 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cme12g00402 1007 MobiDBLite consensus disorder prediction 755 770 - -
Cme12g00402 1007 CDD CID_Pcf11 80 199 - -
Cme12g00402 1007 MobiDBLite consensus disorder prediction 741 784 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02433 Cme-Chr4:30964913 Cme12g00402 Cme-Chr12:5850408 1.84E-33 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42296 PF04818 CID 3.00E-11 CL0020 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00402 K14400 - csv:101206311 1931.38