Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g00402 | ATGACCCGTTTCATGGAATCGGAAAAGCTCTTAATTTCACGAGGAAACCCTAGAAATTCTGCATATCCATCTGACCGCCCAATCCCCACCACCAGCGGCAGGACTATGCCCAATGAGTTGCCACAAAAGCCTCCCCCTTCTATAGCTCACCGGTTTAGAGCTCAGCTTAAGCAGCGGGATGATGAATTTAGGGTTTCTGGCCATGATGTTGTACCCCCTCCTACCGCTGAGGATATTGTGCAGTTGTATGACCTCATGTTGTCGGAGCTCACTTTTAATTCGAAGCCCATCATTACCGATCTCACTGTTCTTGCTGATGAGCAGAGAGAACATGGGAAGGGCATTGCCGACTTAATTTGTGCGCGGATTCTCGAGGTTCCAGTTGACCAAAAACTTCCTTCATTATATCTATTAGACAGCATCGTTAAGAATGTTGGGCACGAGTACATCAGTTATTTCTCATCTCGTTTACCTGAGGTGTTTTGCGAGGCTTACAGGCAAGTTCATCCTAATTTGCACAATGCAATGCGCCACCTCTTTGGGACTTGGGCAACTGTGTTTCCACCATCCATCATTCGGAAGATCGAAGCTCAACTTTCTCAGCTAACAGCACAAGAGTCATCAGGTTTGACATCCTCGAGGGCTTCTGAATCTCCTAGGCCAACTCATGGTATTCATGTCAATCCAAAATACTTGCGCCAGCTGGAACACTCAGTGGTGGATAAACATACCCAAGATTCAAGAGGGACCTCAGCTATAAAAGTTCATGATAAAAAGCTTGCTTCTGGATATGAAGAGTATGACTATGATCATGCGGATGCTCTTGAACATGGTGGAGCTCAAGAATTCCATTCAATGGGAAGCATGGGCCATGATTCTTTTTCCCTTGGAACAAATAAAGCAAATGTAAAGCTAGCAAAATCATCTCTGTCTTCAAGAATTGGACACCATAGACCTCTACAATCACTTGGTGATGAACTTGAATCAGTCAGAGCCTCACCCTCGCAGAATGTATATGATTATGAAGGTTCTAAAATTCTTGATAGAAATGAGGATACCAATAAATGGAGGAGAAAGCAATATCCTGACGATAATATGAATGGACTTGAAAATACTTCTTCATATAATATTAGAAATGGACATGCACTTGAGGGACCAAGAGCTTTAATTGAAGCATATGGAAGTGATAAAGGAAAAGGTTATTTAAACGACAATCCACCTCAAGCTGAACATTTTTCTATTAGTGGTATAGACAACAAGGCAACTCCGGTAACATGGCAGAACACTGAAGAAGAAGAGTTTGATTGGGAAGATATGAGCCCCACATTAGCTGATAGAGGCAGAAATAATGATATGTTGAAACCAACTGTCCCACCTTCAAGATTTAGGACAAGATCAGGATTTGAAAGATCAAATGCTATGCCTATAGAGCCAGGAATGAGAAGCAATTGGTCTAGTCAGGTTCAGCTACCGGGTATTGATTCCTCCATAGTTATTGAAGATGTGGTCCATTCAACACCTGATATTTGGAAAATGCACAATCACATTTCTCAGACATCTCAGAACCTCATGAACAATAAAGGACCGGGAAGAAATTTCCAGATGCCTATGTTGGGGAGAGGCATAACTTCCTCTGGTGGTGAGAAGATGTCACCCTACGGTGACAAGCTTTTGACCAATGATGCTTTACATAGGCCCACTAACATTGCTTCGAGATTGGGTTCTTCTGGTCTTGACTCTAACATGGAGTCGCAATCAATTGTACAATCTATGGGCCCAAGGCATCCTCTGAATCTTTCTAACTCTTGCCCACCCTCCAGGCCTCCTGTTTTTCCTGTACCAAGACACAATACAAGTCAGTTTGAGTCTCTAAATGGTAGCAATTCTTTCATGAATTCTGCAAATAGGACTTTTTTGCCTGAGCAGCAGATGAATAACTTGAGAAATAAGGAGCTAAGTCTTACAACTAAGTCACCACAAGTTGGCAACCAACATACTGGGCATATTCCTTTAACTCGGGGAAACCAATTGCAGTCCATGCCTTTAAAGCCGCAATTTCTACCATCTCAGGACATGCAAGATAATTTTAGTGGATCAGCAGTACCTCCAGTGTTACCACATTTAATTGCACCATCTTTGAGTCAAGGATACATTTCACAAGGACATCGCCCTGCTAATAGTGAGGGTTTGTCAAGTTCTGCCCCTATTGGACAATGGAATTTGTCTGTTCATAATAGCTCCAGTAACCCTTTGCATTTACAAGGAGGGCCGCTGCCACCTCTTCCACCTGGGCCTCATCCTACTTCTGGTCCAACTATACCTATCTCTCAAAAGGTTCCTGGTCAGCAACCTGGAACTGCAATTTCTGGCCTCATAAGTTCTCTCATGGCCCGGGGTTTAATCTCATTGAACAATCAAGCTTCTGTACAGGATTCTGTTGGGTTAGAATTCAATCCAGATGTACTCAAGGTGCGACATGAATCAGCAATAACTGCTCTATATGCTGATCTTCCTCGACAATGCATGACCTGTGGTCTTCGATTCAAGACCCAGGAAGAGCATAGTAATCATATGGATTGGCATGTCACTAAAAATCGTATGTCAAAAAGTAGGAAGCAAAAGCCTTCACGCAAATGGTTTGTAAGTATTAGCATGTGGCTTAGCGGTGCAGAGGCTCTGGGAACGGAGGCAGTTCCAGGATTTTTGCCTGCTGAGGTCGTTGTAGAGAAAAAAGATGATGAAGAACTGGCTGTTCCTGCTGACGAGGATCAGAAGACATGTGCATTATGCGGAGAACCTTTCGAGGATTTTTACAGTGATGAAACAGAGGAGTGGATGTATCGGGGTGCTGTCTATATGAATGCACCTGATGGACAAACAGCCGGCATGGATAGATCTCAATTAGGGCCCATAGTGCATGCTAAATGCAGGACTGAAACTAATGTGGTTCCCTCTGAAAGTTTTGACCAAGATGAAGGGGGAGTTAGTGAAGACGGTAATCGAAGAAAACGATTGCGGAGCTAG | 3024 | 43.42 | MTRFMESEKLLISRGNPRNSAYPSDRPIPTTSGRTMPNELPQKPPPSIAHRFRAQLKQRDDEFRVSGHDVVPPPTAEDIVQLYDLMLSELTFNSKPIITDLTVLADEQREHGKGIADLICARILEVPVDQKLPSLYLLDSIVKNVGHEYISYFSSRLPEVFCEAYRQVHPNLHNAMRHLFGTWATVFPPSIIRKIEAQLSQLTAQESSGLTSSRASESPRPTHGIHVNPKYLRQLEHSVVDKHTQDSRGTSAIKVHDKKLASGYEEYDYDHADALEHGGAQEFHSMGSMGHDSFSLGTNKANVKLAKSSLSSRIGHHRPLQSLGDELESVRASPSQNVYDYEGSKILDRNEDTNKWRRKQYPDDNMNGLENTSSYNIRNGHALEGPRALIEAYGSDKGKGYLNDNPPQAEHFSISGIDNKATPVTWQNTEEEEFDWEDMSPTLADRGRNNDMLKPTVPPSRFRTRSGFERSNAMPIEPGMRSNWSSQVQLPGIDSSIVIEDVVHSTPDIWKMHNHISQTSQNLMNNKGPGRNFQMPMLGRGITSSGGEKMSPYGDKLLTNDALHRPTNIASRLGSSGLDSNMESQSIVQSMGPRHPLNLSNSCPPSRPPVFPVPRHNTSQFESLNGSNSFMNSANRTFLPEQQMNNLRNKELSLTTKSPQVGNQHTGHIPLTRGNQLQSMPLKPQFLPSQDMQDNFSGSAVPPVLPHLIAPSLSQGYISQGHRPANSEGLSSSAPIGQWNLSVHNSSSNPLHLQGGPLPPLPPGPHPTSGPTIPISQKVPGQQPGTAISGLISSLMARGLISLNNQASVQDSVGLEFNPDVLKVRHESAITALYADLPRQCMTCGLRFKTQEEHSNHMDWHVTKNRMSKSRKQKPSRKWFVSISMWLSGAEALGTEAVPGFLPAEVVVEKKDDEELAVPADEDQKTCALCGEPFEDFYSDETEEWMYRGAVYMNAPDGQTAGMDRSQLGPIVHAKCRTETNVVPSESFDQDEGGVSEDGNRRKRLRS | 1007 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 5850408 | 5858067 | - | MELO3C004944.2.1 | Cme12g00402 | 343619 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g00402 | 1007 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 841 | 861 | IPR013087 | - | |
Cme12g00402 | 1007 | Gene3D | - | 73 | 201 | IPR008942 | - | |
Cme12g00402 | 1007 | SMART | 558neu5 | 78 | 200 | IPR006569 | - | |
Cme12g00402 | 1007 | PANTHER | POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 | 42 | 982 | - | - | |
Cme12g00402 | 1007 | ProSiteProfiles | CID domain profile. | 75 | 203 | IPR006569 | - | |
Cme12g00402 | 1007 | SUPERFAMILY | ENTH/VHS domain | 75 | 203 | IPR008942 | - | |
Cme12g00402 | 1007 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
Cme12g00402 | 1007 | MobiDBLite | consensus disorder prediction | 441 | 465 | - | - | |
Cme12g00402 | 1007 | Pfam | CID domain | 87 | 194 | IPR006569 | - | |
Cme12g00402 | 1007 | MobiDBLite | consensus disorder prediction | 979 | 1007 | - | - | |
Cme12g00402 | 1007 | MobiDBLite | consensus disorder prediction | 206 | 226 | - | - | |
Cme12g00402 | 1007 | MobiDBLite | consensus disorder prediction | 13 | 38 | - | - | |
Cme12g00402 | 1007 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 42 | 982 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
Cme12g00402 | 1007 | MobiDBLite | consensus disorder prediction | 755 | 770 | - | - | |
Cme12g00402 | 1007 | CDD | CID_Pcf11 | 80 | 199 | - | - | |
Cme12g00402 | 1007 | MobiDBLite | consensus disorder prediction | 741 | 784 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02433 | Cme-Chr4:30964913 | Cme12g00402 | Cme-Chr12:5850408 | 1.84E-33 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42296 | PF04818 | CID | 3.00E-11 | CL0020 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g00402 | K14400 | - | csv:101206311 | 1931.38 |