Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00421 ATGGAACATAGTTATGGGTTTGAACAGCATGTTGCTCAACAAAGTCGGCGTGATAAGTTAAGGGTTCCGCAGAATTATTTACGAGTTGGGGAAGTATCGAGAAATTCTGATGAACAATTGAGTTTTCATAACTCGGAGCATTCGGGAGTTGATTTGGATATTGTTAGAATTCAAAGTTTTAACAAGGATGCAATTTTGCCTCATGATCACTCATCTTTGCTACCTTCAGAAATGATAAATTTCTCAAGAGACTCGAACGTTTTATCGAACCAAAGGGATATGATGTTGCGTCAAGAACTGGAAGACCCGGCGCAATGCAGTAGACAAATTGTGACAGATAATAGTATTGATTATTGGAAAAGTTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCCAACTTCTTCCTCTTTTAACAATACATCCAACCAGACATTCAATCAGGATGGACAAAAACGTATAGTAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCTATTCGAACTCAGGGTCTTGAAATGACATCCATTGTACAGCATAATTTTACCGAGATTAACCAAACTGCTGCTTGTGAAGGCAGTGCGAACGAGCTTGCTCTTCTTCCGGTATACAGGGATCAGCCAAATGTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTACTATAATTGCCGCAGCTGGATTGGTGAATTGGGGTCTATTGCTAGAAAAACCGATGAAGAGTTAAGGTCTTTTATGAGTGATTCCAATCCACAAGGTCTAGCCCTGTCGTTGTCTTCGAATCCACCGTCTAAACTGCCCACCACACAGTTTGAAGAATCAGAGGATTTGCAGGAAAGTATAACTGTGTTAAAAAATTCACAAGAATCCAAAACAATCAAATCTGAGAATTTGTGTAGATTACCAAAGCCTACATCTATTGGAACTAAAAATTATGGGAAATCTTTGCAAGATGTGATGGGAGTTCCTGTGAATCCATATAGAAATACAGGTCCTCTTGGCCCCTTTACTGGGTATGCAACTATTTTAAAGAGTTCAAAATTCTTAAAACCTGCCCAACTGCTGTTGGATGAATTTTGTGGCTCAAATGGTCATAGGTTTGTCCTACCATGTGAGGTATTTGAGAAGACACCCGGGGAAGTTGGTGTCTCAACGGTTTTTAATGCATTTAGAAATGAGGTTGTGAAGGAAAGTAGTTCGTGTGCAGACGCCTCTACATTCTGCGGCTCAAACGAATCAAATATTAGTGGAGTTGGAAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAACAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCCGCAACACCCTACATTTCCCTGGCGCTGAAGACAGTCTCAAGACACTTCCGGTCTCTAAAGAATGCCATCTCTGAACAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCTTCTGCTGGGACAAGCGGCAGCAAAGGCGATGCAAATTCAACTAGGTTGAAATATATGGAACAGAGCTTCCAAAAGCACAAATCTGGCATTGTCAATATTGGATTCCTCGAATCCCAAAATGCATGGAGGCCACAGAGAGGTTTGCCTGAACGTGCCGTAGCAATCCTTAGAGCATGGCTCTTCGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGGTGTCTAATTGGTTCATAAATGCTCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGAAGAAACGAACAACAGAAGCCATGGTACGAGAGATGGAAGTTCTACATTAGAAAACACAGCCGGTTGGACCAGTAACGAACACCAGCCTCTAAAAAACCAGGGTGTTGTAAATGAGATGTCTAGTCATCATTTGCAGTGCTTTGGGGTAGATTCCACCAGTGGCGACCAAAATGGACTCGGCAGCAGCGCCCAACAGTGGGATCAAGGCAAACAATCAAAATTGGACAATGGGATTCAGTCCAACATGGAAAGAGAACTGATGGGGTTCATGCCATATCAAGCCAGTGCAGCCGAGGTTGGAGGACTCGGAGCTGTCTCTCTAACATTAGGCCTTCGCCACAGAGTCGAGAGTGCACACCATCAACAGCAACGGCATCAATTGCAGCAACAAGATGACCAACTAATTCGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGTTTTTTGCCACGATCACTGTTCACTGTTGAGGACAACTTCTAA 2493 42.64 MEHSYGFEQHVAQQSRRDKLRVPQNYLRVGEVSRNSDEQLSFHNSEHSGVDLDIVRIQSFNKDAILPHDHSSLLPSEMINFSRDSNVLSNQRDMMLRQELEDPAQCSRQIVTDNSIDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFPTSSSFNNTSNQTFNQDGQKRIVGELHLPPIYQNTLQDVVTSASIRTQGLEMTSIVQHNFTEINQTAACEGSANELALLPVYRDQPNVLPYDSTGSWTDRTYYNCRSWIGELGSIARKTDEELRSFMSDSNPQGLALSLSSNPPSKLPTTQFEESEDLQESITVLKNSQESKTIKSENLCRLPKPTSIGTKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSNGHRFVLPCEVFEKTPGEVGVSTVFNAFRNEVVKESSSCADASTFCGSNESNISGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGDANSTRLKYMEQSFQKHKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMEETNNRSHGTRDGSSTLENTAGWTSNEHQPLKNQGVVNEMSSHHLQCFGVDSTSGDQNGLGSSAQQWDQGKQSKLDNGIQSNMERELMGFMPYQASAAEVGGLGAVSLTLGLRHRVESAHHQQQRHQLQQQDDQLIRHYGSEMIHDFVGFLPRSLFTVEDNF 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 6337581 6343227 + MELO3C004927.2.1 Cme12g00421 343638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00421 830 Gene3D - 598 660 - -
Cme12g00421 830 SUPERFAMILY Homeodomain-like 596 661 IPR009057 -
Cme12g00421 830 MobiDBLite consensus disorder prediction 288 311 - -
Cme12g00421 830 SMART prehox3 379 537 IPR006563 -
Cme12g00421 830 MobiDBLite consensus disorder prediction 677 696 - -
Cme12g00421 830 Pfam Associated with HOX 384 536 IPR006563 -
Cme12g00421 830 ProSiteProfiles 'Homeobox' domain profile. 592 655 IPR001356 GO:0003677
Cme12g00421 830 SMART HOX_1 595 659 IPR001356 GO:0003677
Cme12g00421 830 Pfam Homeobox KN domain 612 651 IPR008422 GO:0003677|GO:0006355
Cme12g00421 830 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 35 784 - -
Cme12g00421 830 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 784 - -
Cme12g00421 830 MobiDBLite consensus disorder prediction 670 696 - -
Cme12g00421 830 MobiDBLite consensus disorder prediction 719 743 - -
Cme12g00421 830 CDD homeodomain 595 656 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02662 Cme-Chr4:32282406 Cme12g00421 Cme-Chr12:6337581 3.11E-72 dispersed
Cme08g02450 Cme-Chr8:31375544 Cme12g00421 Cme-Chr12:6337581 3.07E-69 dispersed
Cme10g01470 Cme-Chr10:18200089 Cme12g00421 Cme-Chr12:6337581 3.36E-19 dispersed
Cme11g00313 Cme-Chr11:3310166 Cme12g00421 Cme-Chr12:6337581 6.92E-78 dispersed
Cme12g00421 Cme-Chr12:6337581 Cme04g02323 Cme-Chr4:30173085 6.85E-71 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42298 PF07526 POX 1.80E-42 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00421 - - csv:101214235 1541.94