Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00460 ATGGCCATGGCTATGGCCCATCACAGGGAGAATGGCGATGGGGGTATCAATGGCCACCTTGACAGCACTGGGAAATATGTCCGTTACACTACGGAGCAAGTGGAAGCTCTTGAGCGAGTCTATGCGGAATGCCCTAAACCAAGCTCCTTGCGCCGCCAGCAGCTGGTTCGTGATTGCCCCATTTTAGCCAACATCGAACCCAAGCAGATCAAAGTCTGGTTCCAAAACCGCAGATGTAGAGAGAAACAAAGAAAAGAGGCTTCTCGTTTACAGTCACTAAACAGTAAATTGACGGCTATGAACAAGCTGTTGATGGAGGAGAATGATAGGTTGCAGAAGCAAGTGTCTCAGCTCGTCTGTGAGAATGGGTATATGCGCCAACATTTGCAAACTACTAATGCACCAGCAGCAACAACTACTGATGCAGCTTGTGACTCGGTGGCTACTACGCCTCAGCTTTCACTTAGAGATGCTAGTAGCCCTGCTGGACTCTTGTCTATTGCAGAGGAGATTTTGGCAGCCTTCCTGTCTAAGGCTACAGGAACTGCTGTCGATTGGGTCCAGATGCCTGGGATGAAGTGGGGTGGCCGCACGAGCTTGTGGTCTTGTCGGTTTAGAGCCCATGAAGGCAAGCATGTTCATACTACTGATTTAGCAATGTTTATTATGATTGCAGAGATCCTAAAAGATCGTACATCTTGGTTTCGCGATTGCCGGAGCCTTGAAGTCTTTACAACACTTCCCACTTGTGATGGTGGAACAATCGAACTTGTTTATACGCAGGTTTATGCTCCTACTACATTAGCGCCTGCACGAGATTTTTGGACTCTAAGATACACCAAAACTTTAGAAAATGGCAATCTTGTGGTTTGTGAGAGATCGCTGTCCGGATCTGGCACGGGGCCAAATGCAGCTTCTGCTTCTCAATTTATAAGAGCCGAAATGCTTCCTAGTGGCTACTTGATTCGCCCATGTGAGGGTGGTGGTTCTATCATCCGCATTGTAGACGACCTAAATCTTGAGCCTTGGGGTGTTCCAGAGGTAGTACGACCACTTTACGAATCATCAAAAGCTGTGGCCCAGAAAATGACTATAGCAGCTCTTCGCTATGTGAGGCAAATCGCTCAAGAGACCAGTGGTGAAGTAGTATACAGTTTAGGCAGGCAACCAGCTGTTCTGCGAACTTTCAGCCAAAGATTGAGCAGAGGATTTAACGATGCTGTCAACGGGTTCAATGATGATGGGTGGTCTTTGGTCAATTGTGATGGAGCTGATGATGTGATCCTTGCCATAAATTCGAGTAAGAATCTAAATACATCATATGATCCAGTCAATTCTCTTGCATTCCACGGGGGAATCCTTTGTGCAAAGGCTTCAATGCTTCTCCAAAATGTTCCTCCAATTGCTCTAATTCGCTTCTTGAGGGAGCATCGGTCCGAGTGGGCTGATTTCAATGTTGATGCCTACTCCGCTGCATCATTAAAAACTGGTTCATATGCATACCCAGGCATGAGACCGACAAGGTTTACAGGGAGCCAAATCATCATGCCACTCGGTCATACAATTGAACAAGAAGAGTTGCTTGAAGTTGTAAGACTTGAAAGTCACCCTCTTGCTCAAGAAGATGCTTTTATGTCCCGGGACATTCATCTCTTGCAGATGTGTACCGGCATCGATGAGAATGCTGTTGGGGCGTGTTCTGAACTTGTGTTTGCTCCAATCGATGAGATGTTTCCTGATGATGCTGTGCTATTGGCCTCTGGTTTCAGGATCATCCCATTACATTCTAAAACAGAGTGA 1800 46.61 MAMAMAHHRENGDGGINGHLDSTGKYVRYTTEQVEALERVYAECPKPSSLRRQQLVRDCPILANIEPKQIKVWFQNRRCREKQRKEASRLQSLNSKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQHLQTTNAPAATTTDAACDSVATTPQLSLRDASSPAGLLSIAEEILAAFLSKATGTAVDWVQMPGMKWGGRTSLWSCRFRAHEGKHVHTTDLAMFIMIAEILKDRTSWFRDCRSLEVFTTLPTCDGGTIELVYTQVYAPTTLAPARDFWTLRYTKTLENGNLVVCERSLSGSGTGPNAASASQFIRAEMLPSGYLIRPCEGGGSIIRIVDDLNLEPWGVPEVVRPLYESSKAVAQKMTIAALRYVRQIAQETSGEVVYSLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSLVNCDGADDVILAINSSKNLNTSYDPVNSLAFHGGILCAKASMLLQNVPPIALIRFLREHRSEWADFNVDAYSAASLKTGSYAYPGMRPTRFTGSQIIMPLGHTIEQEELLEVVRLESHPLAQEDAFMSRDIHLLQMCTGIDENAVGACSELVFAPIDEMFPDDAVLLASGFRIIPLHSKTE 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 7573593 7581712 - MELO3C004888.2.1 Cme12g00460 343677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00460 599 Gene3D - 19 91 - -
Cme12g00460 599 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 598 - -
Cme12g00460 599 SMART HOX_1 22 88 IPR001356 GO:0003677
Cme12g00460 599 Coils Coil 90 121 - -
Cme12g00460 599 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 598 IPR044830 GO:0003700
Cme12g00460 599 Pfam Homeodomain 26 83 IPR001356 GO:0003677
Cme12g00460 599 SUPERFAMILY Bet v1-like 166 376 - -
Cme12g00460 599 Pfam START domain 167 373 IPR002913 GO:0008289
Cme12g00460 599 ProSiteProfiles START domain profile. 157 383 IPR002913 GO:0008289
Cme12g00460 599 CDD bZIP 77 116 - -
Cme12g00460 599 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Cme12g00460 599 CDD homeodomain 25 85 IPR001356 GO:0003677
Cme12g00460 599 Gene3D - 203 380 IPR023393 -
Cme12g00460 599 SMART START_1 166 374 IPR002913 GO:0008289
Cme12g00460 599 SUPERFAMILY Homeodomain-like 23 88 IPR009057 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme11g01800 Cme12g00460 CCT
Cme11g01800 Cme12g00460 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01800 Cme-Chr11:26163010 Cme12g00460 Cme-Chr12:7573593 0 dispersed
Cme12g00460 Cme-Chr12:7573593 Cme12g01106 Cme-Chr12:18966772 0 dispersed
Cme12g00460 Cme-Chr12:7573593 Cme08g00387 Cme-Chr8:2409975 2.86E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42299 PF01852 START 8.90E-35 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00460 K09338 - cpap:110820480 945.266