Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g00482 | ATGATTTCAAATTCTCAAATGCTTTCTCTTCCTTCACAACATCATCCCTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGATAACCTTCTTTCTTCTTATTCCCAATCAAGCAACACTCTCCTTTACAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCCGTTGTCAACATCGCCGTCTACAATCTTGAAAACTCAAGGGAATCTCTTCCCTCTGCTCCCGCCTCATCCCAGTCACCAGTGGCGACTGCAGCCGTTAATTCTTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTTACATGTCAACAAATGGATAACCTCGTTGTGAATGCCTCCTTACCCAACAACAACGTTGGTAACATCCTCCAAGGTCAACACCACCAGCGTCAAGGTCCCGTTGACGATAACAATGGACGATCCAACACCCTTTTCGATATGGCCAACAACCATCATCACCAACGACAGGATTGGTACAACCTGACTACGTCTAATAATTATAACGACAACAACAACAACGGTAGAACATTGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTGGAGCTCGACGCATCAGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGCGGGAAAGGGTTCAAGCGAGATGCAAACCTTAGAATGCACATGCGAGCACACGGGGACGAGTACAAAGCAAGCGGAGCTTTGAGCAACCCCGAGAAGAGCCATAGAAAGGACTTGAATAACATAAGCAAGATGGGGATCAAATACTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACACGTGAAGTTTCAACCATTAAAATCATTAATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGTCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACTCATGAGAAGCATTGTGGGGATGTGAAATGGCTATGTTCTTGTGGTACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTTGCTTTGTTCATCGGGCATGCTCCGGCCATTGGTTCATCGACAAAATTTTCAGGAAAACAAGAACACCAGTATGTTCATTCATTCTAA | 1131 | 42.0 | MISNSQMLSLPSQHHPLVSSSNDHHETLDNLLSSYSQSSNTLLYNLSILKEKLHQIQSVVNIAVYNLENSRESLPSAPASSQSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLPNNNVGNILQGQHHQRQGPVDDNNGRSNTLFDMANNHHHQRQDWYNLTTSNNYNDNNNNGRTLTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRKDLNNISKMGIKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFIGHAPAIGSSTKFSGKQEHQYVHSF | 376 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 8275347 | 8276869 | + | MELO3C004869.2.1 | Cme12g00482 | 343699 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g00482 | 376 | Gene3D | Classic Zinc Finger | 300 | 350 | - | - | |
Cme12g00482 | 376 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 213 | 233 | IPR013087 | - | |
Cme12g00482 | 376 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 211 | 238 | IPR013087 | - | |
Cme12g00482 | 376 | MobiDBLite | consensus disorder prediction | 127 | 151 | - | - | |
Cme12g00482 | 376 | SUPERFAMILY | beta-beta-alpha zinc fingers | 209 | 236 | IPR036236 | - | |
Cme12g00482 | 376 | Gene3D | Classic Zinc Finger | 185 | 268 | - | - | |
Cme12g00482 | 376 | Pfam | Zinc finger, C2H2 type | 211 | 233 | IPR013087 | - | |
Cme12g00482 | 376 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cme12g00482 | 376 | PANTHER | OS08G0562300 PROTEIN | 22 | 371 | - | - | |
Cme12g00482 | 376 | SMART | c2h2final6 | 264 | 297 | IPR013087 | - | |
Cme12g00482 | 376 | SMART | c2h2final6 | 302 | 324 | IPR013087 | - | |
Cme12g00482 | 376 | SMART | c2h2final6 | 211 | 233 | IPR013087 | - | |
Cme12g00482 | 376 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 22 | 371 | IPR044300 | GO:0010044|GO:0010447 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme08g00763 | Cme-Chr8:5101980 | Cme12g00482 | Cme-Chr12:8275347 | 2.62E-70 | dispersed | |
Cme12g00482 | Cme-Chr12:8275347 | Cme02g00092 | Cme-Chr2:707240 | 2.96E-23 | dispersed | |
Cme12g00615 | Cme-Chr12:11101277 | Cme12g00482 | Cme-Chr12:8275347 | 1.10E-21 | dispersed | |
Cme12g00482 | Cme-Chr12:8275347 | Cme03g01971 | Cme-Chr3:27590275 | 1.59E-24 | transposed | |
Cme12g00482 | Cme-Chr12:8275347 | Cme01g00481 | Cme-Chr1:3468044 | 1.50E-24 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42300 | PF00096 | zf-C2H2 | 9.60E-05 | CL0361 | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g00482 | - | - | csv:101203636 | 686.026 |