Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00482 ATGATTTCAAATTCTCAAATGCTTTCTCTTCCTTCACAACATCATCCCTTGGTTTCATCTTCTAATGATCATCATGAAACCCTAGATAACCTTCTTTCTTCTTATTCCCAATCAAGCAACACTCTCCTTTACAACCTCTCAATTTTGAAGGAGAAACTCCACCAAATCCAATCCGTTGTCAACATCGCCGTCTACAATCTTGAAAACTCAAGGGAATCTCTTCCCTCTGCTCCCGCCTCATCCCAGTCACCAGTGGCGACTGCAGCCGTTAATTCTTTGATCCAAGAACTCATCATGGCTGCTTCCTCCATGTTGTTTACATGTCAACAAATGGATAACCTCGTTGTGAATGCCTCCTTACCCAACAACAACGTTGGTAACATCCTCCAAGGTCAACACCACCAGCGTCAAGGTCCCGTTGACGATAACAATGGACGATCCAACACCCTTTTCGATATGGCCAACAACCATCATCACCAACGACAGGATTGGTACAACCTGACTACGTCTAATAATTATAACGACAACAACAACAACGGTAGAACATTGACAACAAAAACAACACAAGATCATCGAAATTCGATCAATATCGTGGAGCTCGACGCATCAGATCTTCTAGCAAAATACACCCATTATTGTCAAATTTGCGGGAAAGGGTTCAAGCGAGATGCAAACCTTAGAATGCACATGCGAGCACACGGGGACGAGTACAAAGCAAGCGGAGCTTTGAGCAACCCCGAGAAGAGCCATAGAAAGGACTTGAATAACATAAGCAAGATGGGGATCAAATACTCATGTCCACAAGAAGGCTGCAGATGGAACCAAAAACACGTGAAGTTTCAACCATTAAAATCATTAATTTGTGTGAAAAATCACTTCAAAAGAACTCATTGTCCCAAAATGTATGTTTGCAAATTGTGTAGTAGGAAGAAATTTTCAGTGCTTTCTGATTTGAGGACTCATGAGAAGCATTGTGGGGATGTGAAATGGCTATGTTCTTGTGGTACCACATTTTCCAGGAAAGATAAGCTGATGGGTCATGTTGCTTTGTTCATCGGGCATGCTCCGGCCATTGGTTCATCGACAAAATTTTCAGGAAAACAAGAACACCAGTATGTTCATTCATTCTAA 1131 42.0 MISNSQMLSLPSQHHPLVSSSNDHHETLDNLLSSYSQSSNTLLYNLSILKEKLHQIQSVVNIAVYNLENSRESLPSAPASSQSPVATAAVNSLIQELIMAASSMLFTCQQMDNLVVNASLPNNNVGNILQGQHHQRQGPVDDNNGRSNTLFDMANNHHHQRQDWYNLTTSNNYNDNNNNGRTLTTKTTQDHRNSINIVELDASDLLAKYTHYCQICGKGFKRDANLRMHMRAHGDEYKASGALSNPEKSHRKDLNNISKMGIKYSCPQEGCRWNQKHVKFQPLKSLICVKNHFKRTHCPKMYVCKLCSRKKFSVLSDLRTHEKHCGDVKWLCSCGTTFSRKDKLMGHVALFIGHAPAIGSSTKFSGKQEHQYVHSF 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8275347 8276869 + MELO3C004869.2.1 Cme12g00482 343699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00482 376 Gene3D Classic Zinc Finger 300 350 - -
Cme12g00482 376 ProSitePatterns Zinc finger C2H2 type domain signature. 213 233 IPR013087 -
Cme12g00482 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 211 238 IPR013087 -
Cme12g00482 376 MobiDBLite consensus disorder prediction 127 151 - -
Cme12g00482 376 SUPERFAMILY beta-beta-alpha zinc fingers 209 236 IPR036236 -
Cme12g00482 376 Gene3D Classic Zinc Finger 185 268 - -
Cme12g00482 376 Pfam Zinc finger, C2H2 type 211 233 IPR013087 -
Cme12g00482 376 MobiDBLite consensus disorder prediction 1 23 - -
Cme12g00482 376 PANTHER OS08G0562300 PROTEIN 22 371 - -
Cme12g00482 376 SMART c2h2final6 264 297 IPR013087 -
Cme12g00482 376 SMART c2h2final6 302 324 IPR013087 -
Cme12g00482 376 SMART c2h2final6 211 233 IPR013087 -
Cme12g00482 376 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 22 371 IPR044300 GO:0010044|GO:0010447
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00763 Cme-Chr8:5101980 Cme12g00482 Cme-Chr12:8275347 2.62E-70 dispersed
Cme12g00482 Cme-Chr12:8275347 Cme02g00092 Cme-Chr2:707240 2.96E-23 dispersed
Cme12g00615 Cme-Chr12:11101277 Cme12g00482 Cme-Chr12:8275347 1.10E-21 dispersed
Cme12g00482 Cme-Chr12:8275347 Cme03g01971 Cme-Chr3:27590275 1.59E-24 transposed
Cme12g00482 Cme-Chr12:8275347 Cme01g00481 Cme-Chr1:3468044 1.50E-24 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42300 PF00096 zf-C2H2 9.60E-05 CL0361 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00482 - - csv:101203636 686.026