Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00517 ATGGCGCTCTCTTTATCCCTACAACTCATTCGCTTCCCTCCTCGACCCCTATCCTCATCCTCTCACCACCTTCTCATCTCTGACCTCACCTCTGTCTCCCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCCCGAGACTGCGCCCTGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAGCAGTGGAGTGAATCGGAAGCGTTTGTCTCCGATGTGGACGAAGGGGGAGATCTTGAGGATGATATTGATATTAGTGTTCGGGAAGACAGCTCTGTTGCCACTGCTGCTTCTGCGCAGAGGATTTCTTCTTCTTCTTCTTCTTCACCGAGTGATTATCTCTCGCTTGCGATTCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGCTAATGGAACCGTATCCACCAGGAAGGTTAATAGACGGCAGCTGTTGAAGTCAAGTGGGCTTCGTCCTCGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTACGTGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCCATGCAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCGGCAATGCCATTTGAACTCGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACACTGGTTGAATTAGGTTCTAGAGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCACAAGAAATTCGGCGCATCTGTATTATGGGTAGGAATTGCACGCTGAATAAAAGAAATGATGATGTGGAGTGCACTCTTCCTTTGGATAAGCAGATTGCTGATGACGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTAAGCTCCCGGCGATTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGCACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTTTGGTTAACAACGGCTGGGATAATCGTTGGTGCTGTTGTGGCATTCTTTCTCATGTATTCATATCTCAGAGATAGGAGAATCCTATAG 1380 45.43 MALSLSLQLIRFPPRPLSSSSHHLLISDLTSVSRFFRSPCLSSLAPSRDCALKLSSRTKCFSMSTEEEQWSESEAFVSDVDEGGDLEDDIDISVREDSSVATAASAQRISSSSSSSPSDYLSLAIREQVYEVLEVKANGTVSTRKVNRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECTLPLDKQIADDEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRIL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8865759 8886374 - MELO3C004840.2.1 Cme12g00517 343734

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00517 459 Gene3D - 122 206 - -
Cme12g00517 459 Gene3D Magnesium transport protein CorA, transmembrane region 209 390 - -
Cme12g00517 459 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 42 459 IPR039204 -
Cme12g00517 459 CDD Mrs2_Mfm1p-like 132 458 IPR039204 -
Cme12g00517 459 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 42 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00517 K16075 MRS2, MFM1; magnesium transporter - csv:101219314 758.059
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01215 Cme-Chr6:9770716 Cme12g00517 Cme-Chr12:8865759 7.99E-14 dispersed
Cme12g00517 Cme-Chr12:8865759 Cme03g01452 Cme-Chr3:23830675 1.04E-07 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g1134 . Blo03g01303 . . . Bpe08g01293 . Bma07g01468 . . . . . . . . . Bhi08g00115 . . . . . . . . . . . . . . . Cone18ag0237 Cone11ag1343 . . . . . . . Bda09g00228 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme12g00517
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme04g01722 . 1 447 MRS2 Gene Family AT1G16010 84.6 2.5e-206 714.9
Cme05g00459 . 35 322 MRS2 Gene Family AT1G16010 50.3 2.8e-72 269.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G64560 66.9 3.3e-106 382.1
Cme05g00518 . 1 173 MRS2 Gene Family AT5G64560 71.8 1.7e-62 236.9
Cme01g01979 . 1 101 MRS2 Gene Family AT5G64560 80.4 2.5e-37 153.3
Cme01g00132 . 1 495 MRS2 Gene Family AT3G19640 63.5 1.4e-154 543.1
Cme06g01215 . 59 443 MRS2 Gene Family AT3G58970 69.4 4.0e-140 495.0
Cme04g01722 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.1e-113 405.2
Cme03g01452 . 1 194 MRS2 Gene Family AT2G03620 66.5 3.6e-61 232.6
Cme05g00459 . 1 326 MRS2 Gene Family AT5G09690 64.0 7.7e-104 374.0
Cme04g01722 . 40 383 MRS2 Gene Family AT5G09690 50.3 5.5e-78 288.1
Cme05g00518 . 1 172 MRS2 Gene Family AT5G09690 69.9 3.7e-58 222.2
Cme05g00459 . 34 292 MRS2 Gene Family AT5G09720 62.0 3.3e-77 285.4
Cme05g00518 . 23 172 MRS2 Gene Family AT5G09720 68.2 9.3e-48 187.6
Cme04g01722 . 1 447 MRS2 Gene Family AT1G80900 83.0 1.2e-200 696.0
Cme03g01452 . 1 194 MRS2 Gene Family AT1G80900 52.8 8.5e-45 178.3
Cme12g00517 . 16 458 MRS2 Gene Family AT5G22830 68.8 4.1e-159 558.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004489 1 3 0 1 1 1 3 1 1 1 1 1 2 1 2 3 1 2 2 1 2 1 1 1 1 2 1 1 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g00517 Cme_Chr12 FPKM 22.102453 20.403868 0.626916 0.755327 2.020386 1.383762 1.695435 0.103042 0.485367 0.374864