Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00517 ATGGCGCTCTCTTTATCCCTACAACTCATTCGCTTCCCTCCTCGACCCCTATCCTCATCCTCTCACCACCTTCTCATCTCTGACCTCACCTCTGTCTCCCGCTTCTTCCGATCTCCATGTCTTTCCTCTTTGGCTCCGTCCCGAGACTGCGCCCTGAAGTTATCTTCCAGAACCAAGTGTTTCTCCATGTCCACCGAGGAGGAGCAGTGGAGTGAATCGGAAGCGTTTGTCTCCGATGTGGACGAAGGGGGAGATCTTGAGGATGATATTGATATTAGTGTTCGGGAAGACAGCTCTGTTGCCACTGCTGCTTCTGCGCAGAGGATTTCTTCTTCTTCTTCTTCTTCACCGAGTGATTATCTCTCGCTTGCGATTCGAGAGCAGGTTTATGAGGTGTTAGAGGTTAAAGCTAATGGAACCGTATCCACCAGGAAGGTTAATAGACGGCAGCTGTTGAAGTCAAGTGGGCTTCGTCCTCGTGATGTCCGAAGTGTTGATCCATCTTTATTTTTGACAAACTCAATGCCTACATTACTGGTACGTGAACATGCTATTTTGCTTAATCTGGGATCGTTGCGAGCAATAGCCATGCAGGATTGTGTCCTCATATTCGATTATAACCGTCCAGGAGGACAAGCTTTTATTGAATCATTGTTGCCTCGATTGAACCCAAAAAACATGAATGGAGTGCCGGCAATGCCATTTGAACTCGAGGTTGTTGAAGCTGCATTGCTTTCACGAACTCAGCGTTTGGAGCAGCGACTAATGAAAGTAGAACCTCGTGTTCAAGCTCTGCTTGAGGTATTGCCCAACAAATTAACTGCAGATGTGTTGGAACAACTTCGTATTAGCAAGCAGACACTGGTTGAATTAGGTTCTAGAGCAGGGGCTCTCAGACAAATGCTTCTTGATCTTCTGGAGGATCCACAAGAAATTCGGCGCATCTGTATTATGGGTAGGAATTGCACGCTGAATAAAAGAAATGATGATGTGGAGTGCACTCTTCCTTTGGATAAGCAGATTGCTGATGACGAGGAAGAAGAAATAGAAATGCTGTTGGAAAATTATCTCCAGAGATGCGAATCTTGTCATGGTCAGGCTGAAAGGCTTCTGGATTCTGCAAAAGAAATGGAAGATTCAATTGCCGTAAATTTAAGCTCCCGGCGATTAGAGGTTAGCAGAGTGGAATTGCTTCTCCAAGTTGGCACATTTTGTGTGGCAGTTGGTGCTTTAGTTGCAGGAATATTCGGCATGAACTTACGATCATACCTTGAAGAACACGTGTTTGCCTTTTGGTTAACAACGGCTGGGATAATCGTTGGTGCTGTTGTGGCATTCTTTCTCATGTATTCATATCTCAGAGATAGGAGAATCCTATAG 1380 45.43 MALSLSLQLIRFPPRPLSSSSHHLLISDLTSVSRFFRSPCLSSLAPSRDCALKLSSRTKCFSMSTEEEQWSESEAFVSDVDEGGDLEDDIDISVREDSSVATAASAQRISSSSSSSPSDYLSLAIREQVYEVLEVKANGTVSTRKVNRRQLLKSSGLRPRDVRSVDPSLFLTNSMPTLLVREHAILLNLGSLRAIAMQDCVLIFDYNRPGGQAFIESLLPRLNPKNMNGVPAMPFELEVVEAALLSRTQRLEQRLMKVEPRVQALLEVLPNKLTADVLEQLRISKQTLVELGSRAGALRQMLLDLLEDPQEIRRICIMGRNCTLNKRNDDVECTLPLDKQIADDEEEEIEMLLENYLQRCESCHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRVELLLQVGTFCVAVGALVAGIFGMNLRSYLEEHVFAFWLTTAGIIVGAVVAFFLMYSYLRDRRIL 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8865759 8886374 - MELO3C004840.2.1 Cme12g00517 343734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00517 459 Gene3D - 122 206 - -
Cme12g00517 459 Gene3D Magnesium transport protein CorA, transmembrane region 209 390 - -
Cme12g00517 459 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 42 459 IPR039204 -
Cme12g00517 459 CDD Mrs2_Mfm1p-like 132 458 IPR039204 -
Cme12g00517 459 PANTHER MG2+ TRANSPORTER PROTEIN, CORA-LIKE/ZINC TRANSPORT PROTEIN ZNTB-RELATED 42 459 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01215 Cme-Chr6:9770716 Cme12g00517 Cme-Chr12:8865759 7.99E-14 dispersed
Cme12g00517 Cme-Chr12:8865759 Cme03g01452 Cme-Chr3:23830675 1.04E-07 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00517 K16075 - csv:101219314 758.059