Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00518 AAAAAAGAAAAAAAAGAAAAAAGAGAAAAAAAAGAAAAAAAAGGTCACCATTTTTCCATTTTCTCTCCTCTCTCTCCAAAGTTGCGTTTTCTCTCTCTGTTTCTATATAAACACACACACCCACTGTCAACTCACTCGCTTTCAACAAACCTCTCAACTCTTCCGTTGTCTTCTTCATCGAAAATCTCAAGCAAAATGTCTCGCCGAGGCGGCGGCGGTCGTGGTTCGGGTGGTCGTGGTGGACAGCCCTCGCCGGCTGTATCTCGCGGCGGCGGTGGTGGTAGCGGCAGAGGTGGCGGCGGAAGAGGTGGACGAGGCGGTGGTGGGAGAGATGGAGGCAGGGTAGGTCATCCGACTACTCAGCAGTTCCATTCTCCGTCTCCTCAGCCTACTCCGGTTGTTTCCGCGCCTCCTCAGCCTACTCCGGTTGCTTCCCCTCCTCCTCCCCAGACTTCAACGGGAACATCTTCTGCTTCCTCATCGGGAACTGCTGCGCTCTCACAGCCTGAGGTTTCCAAGATCGAAGCACAAGTGGAGAAGATGACATTGACGCCGCAGAATGTTCCGCCGTCTTCATCTAAAGATTTGACTGTGGCGAAGAGGCCGGGATATGGAACCGCTGGCCGGAAAGTTGTTGTTCGTGCCAATCATTTCCTGGTTCAAGTTGCTGACAAAGATCTCTACCATTACGATGTTTCTATTACTCCTGAAGTTGCATCCAAAAGGGTCTGCCGAGATATAATAAACCAGCTTGCAAATACGTATAGAGAATCTCATTTAGGTGGAAGATATCTAGCATATGATGGAGGAAAAAGTGTTTATGTTGCTGGTCAACTTCCATTTTCGTCCAAAGAGTTCATGATAAAATTAGTCCGTAAAGATGGTGCTGGGTCTTCCCAACCAACAAGGAGAGAACGAGAGTTCAAAGTATCTATCAAATTTGCCTCCAAACCAGACCTCCATCATCTACAACAGTTTATACATGGACGTCAACGAGATGCACCACAGGAGACTATACAAGTTCTTGATGTTGTTTTGAGAACAAAACCATCTGTCGAATACACAGTTGTTGGAAGGTCATTTTTTGCGCTTGAATTGGGGGAGCCAGGTGATCTCGGTAATGGTGTTGAGTATTGGAGGGGATATTACCAAAGTCTACGACCTGTACAAATGGATGTGTCAGCTAGATCATTTTATGAACCAATATGTGTGACAGAATATGTTGTTAAACACTTCAACCTAAGGAATTTCTCAAGGCCAATGTCTGATCAGGATTGTCGCAAGATCCGAAAGGTACTTAGAGGTGTGAAGGTTGGACTTACCTGTAGGGAGCATGCCAGGACCTACAAAATTACTGGGATATCATCAGAGCCTGTTAACAGATTAATGTTTACTCTTGATGATCAGAAAACCCGAATCTCTGTTGCACAGTACTTTCGTGAAAAATATGGTGTGACACTCAAATATCCATCTTTACCAGCTATACAAGCTGGTAGTGATGCAAAGCCTGTTTATTTGCCTATGGAGGTTTGTAAGATTGTTGCTGGGCAGAGATATACCAAAAAATTGAATGAACGCCAAGTAACTGAGATGCTAAGAGCGACTTGTCAGAGACCTACGAACAGGGCAGAAAGTATAGGGAAGATGGTTGATAAGATCGATCATTCTAAAGATAAAATTGTCAACGATTTTGGCATTAATGTTGAATCTGGGTTATGTGATGTTGGTGCTCGTGTTTTGCCATCCCCAATGCTAAAATATCACGATACTGGCAAAGAATCAAGAGTTGATCCAAGGATGGGTCAATGGAATATGATTAACAAGAAAATGATCAATGGTGGTAGAGTTGATTATTGGGGCTGTGTGAACTTCTCTTCACGGTTGGATCCAGGTTTGCCATCTGAATTTTGTCATCAGTTGGTTAGCATGTGCAATAGCAAAGGAATGGTTTTCAATCCTACACCGCTGTTTCCTGTACGTACTGCACATGCAAATCAAATTGATGGTGCACTTAGAGACATTCATAGCCATTCTTTAAAAAGTTTGGGACCCCAGGGCAAATCTCTTCAGTTGCTCATAATTATTTTACCTGATATTTCTGGTTCCTATGGGAAGATCAAAAGGATATGTGAGACTGAGCTTGGAATTGTTTCACAATGCTGCCAACCTAGGCAAGCACAAAAGCTGAACAAGCAGTACTTTGAAAATGTGGCCCTTAAAATTAACGTTAAGGTTGGGGGAAGAAACAATGTCCTAAATGATGCTATTCAGCGGAGAATTCCTCTTGTTTCAGATCGGCCTACAATAATCTTTGGAGCAGATGTAACACACCCACAACCTGGAGAGGACTCCAGTCCTTCAATAGCAGCTGTTGTTGCCTCAATGGACTGGCCCGAGGTAACGAAGTATAGAGGAATCGTTTCAGCTCAGGGTCACCGTGATGAAATTATACAAGATTTGTACAGAGAGGATAAAGATCCTCAGAAAGGGTTGGTGCGTGCAGGAATGATCAGGGAGCTTTTCATTGCTTTTAGAAGGTCAACAAATATGAAACCGCACAGAATAATTTTTTACAGAGATGGTGTAAGTGAAGGACAGTTCTCACAAGTTTTATTTTATGAGGTGGATGCAATCAGGAAGGCGTGTGCCTCTCTTGAAGAGGGTTACCAGCCTCCGATTACCTTTGTTGTGGTGCAAAAGAGACATCATACCCGTCTTTTCCCCACCAGTGCGGACACTGATCGGAGTGGAAACATCCTTCCAGGTACTGTTGTCGACACCAGTATTTGCCATCCAACGGAATTTGATTTCTATTTAAACAGCCATGCCGGCATTCAGGGGACGAGTAGGCCAACACATTATCACGTTTTGTATGATGAAAACAAATTCACTGCCGATGCAATGCAGATGCTTACTAATAATCTTTGCTACACGTATGCAAGGTGCACTCGGTCGGTTTCCATTGTTCCACCAGCATATTATGCCCATCTTGCAGCCTTTCGTGCCCGCTATTACATAGAGGGTGATTCATCCGACAGCGGTTCCACAAGTTCAGGTGGTGGGAATGTAGAGATTCAACGGCTGCCAAGCATAAAAGAAAATGTGAAGGATGTGATGTTTTACTGTTGA 3129 44.07 KKEKKEKREKKEKKGHHFSIFSPLSPKLRFLSLFLYKHTHPLSTHSLSTNLSTLPLSSSSKISSKMSRRGGGGRGSGGRGGQPSPAVSRGGGGGSGRGGGGRGGRGGGGRDGGRVGHPTTQQFHSPSPQPTPVVSAPPQPTPVASPPPPQTSTGTSSASSSGTAALSQPEVSKIEAQVEKMTLTPQNVPPSSSKDLTVAKRPGYGTAGRKVVVRANHFLVQVADKDLYHYDVSITPEVASKRVCRDIINQLANTYRESHLGGRYLAYDGGKSVYVAGQLPFSSKEFMIKLVRKDGAGSSQPTRREREFKVSIKFASKPDLHHLQQFIHGRQRDAPQETIQVLDVVLRTKPSVEYTVVGRSFFALELGEPGDLGNGVEYWRGYYQSLRPVQMDVSARSFYEPICVTEYVVKHFNLRNFSRPMSDQDCRKIRKVLRGVKVGLTCREHARTYKITGISSEPVNRLMFTLDDQKTRISVAQYFREKYGVTLKYPSLPAIQAGSDAKPVYLPMEVCKIVAGQRYTKKLNERQVTEMLRATCQRPTNRAESIGKMVDKIDHSKDKIVNDFGINVESGLCDVGARVLPSPMLKYHDTGKESRVDPRMGQWNMINKKMINGGRVDYWGCVNFSSRLDPGLPSEFCHQLVSMCNSKGMVFNPTPLFPVRTAHANQIDGALRDIHSHSLKSLGPQGKSLQLLIIILPDISGSYGKIKRICETELGIVSQCCQPRQAQKLNKQYFENVALKINVKVGGRNNVLNDAIQRRIPLVSDRPTIIFGADVTHPQPGEDSSPSIAAVVASMDWPEVTKYRGIVSAQGHRDEIIQDLYREDKDPQKGLVRAGMIRELFIAFRRSTNMKPHRIIFYRDGVSEGQFSQVLFYEVDAIRKACASLEEGYQPPITFVVVQKRHHTRLFPTSADTDRSGNILPGTVVDTSICHPTEFDFYLNSHAGIQGTSRPTHYHVLYDENKFTADAMQMLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARYYIEGDSSDSGSTSSGGGNVEIQRLPSIKENVKDVMFYC 1042
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8945445 8952771 + MELO3C004836.2.1 Cme12g00518 343735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00518 1042 ProSiteProfiles PAZ domain profile. 419 515 IPR003100 GO:0005515
Cme12g00518 1042 MobiDBLite consensus disorder prediction 43 66 - -
Cme12g00518 1042 SMART Piwi_a_2 691 1007 IPR003165 GO:0003676
Cme12g00518 1042 MobiDBLite consensus disorder prediction 43 170 - -
Cme12g00518 1042 CDD PAZ_argonaute_like 401 514 - -
Cme12g00518 1042 SMART DUF1785_2 355 401 IPR014811 -
Cme12g00518 1042 CDD Piwi_ago-like 559 1006 IPR045246 -
Cme12g00518 1042 Pfam Argonaute linker 2 domain 542 587 IPR032472 -
Cme12g00518 1042 MobiDBLite consensus disorder prediction 130 149 - -
Cme12g00518 1042 SUPERFAMILY Ribonuclease H-like 687 1008 IPR012337 -
Cme12g00518 1042 MobiDBLite consensus disorder prediction 1 22 - -
Cme12g00518 1042 Pfam Mid domain of argonaute 598 675 IPR032473 -
Cme12g00518 1042 Pfam Argonaute linker 1 domain 357 399 IPR014811 -
Cme12g00518 1042 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 97 1026 - -
Cme12g00518 1042 Pfam PAZ domain 425 532 IPR003100 GO:0005515
Cme12g00518 1042 Pfam Piwi domain 693 1006 IPR003165 GO:0003676
Cme12g00518 1042 MobiDBLite consensus disorder prediction 182 201 - -
Cme12g00518 1042 Gene3D - 759 1042 IPR036397 GO:0003676
Cme12g00518 1042 SMART PAZ_2_a_3 404 537 IPR003100 GO:0005515
Cme12g00518 1042 MobiDBLite consensus disorder prediction 150 170 - -
Cme12g00518 1042 ProSiteProfiles Piwi domain profile. 691 1007 IPR003165 GO:0003676
Cme12g00518 1042 Gene3D - 579 754 - -
Cme12g00518 1042 SUPERFAMILY PAZ domain 398 555 IPR036085 GO:0005515
Cme12g00518 1042 Gene3D paz domain 396 519 - -
Cme12g00518 1042 Pfam N-terminal domain of argonaute 209 346 IPR032474 -
Cme12g00518 1042 PANTHER PROTEIN ARGONAUTE 1A 97 1026 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00518 Cme-Chr12:8945445 Cme12g02023 Cme-Chr12:25785423 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00518 K11593 - csv:116403995 1727.22