Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00547 ATGGCGGACGAAGTTCAGAATGATGTGACCGATCAGGTGGCAGATATTGCCCCCTTTGATCCAACTAAGAAGAAGAAGAAGAAGAAAGTTGTACTTCAGGATCCTACTGATGAGATTGTTGACAAGTTAGCAGAGAAAACTGAAAGTTTGTCAGTTTCTGATGGTTTGGAGACTACAACATTTTCTGGACTTAAAAAGAAGAAGAAAAAACCAGTAGAGGCGAGCTCCTTGAATGAAGATAGTGCAGATGCTACGGAAGATTTGGAAGATCAAGCGGGGGAAATTGAAGATCGTGAGGGAATTGTTCTACAGTATCGTTATCCTTGGGAGGGAACTGATCGCGATTATGAATACGAGGAGCTTCTTGGACGGGTATTTAACATTCTTAGAGAGAATAATCCAGAGCTTGCAGGTGATAGGCGTAGAACAGTTATGAGGCCTCCTCAAGTTCTTCGTGAAGGCACAAAGAAAACTGTTTTTGTTAATTTCATGGATCTATGTAAGACGATGCATCGGCAGCCAGACCATGTTATGGCTTTCTTACTAGCTGAACTGGGAACCAGTGGCTCTCTTGATGGACAGCAGAGACTAGTTGTTAAAGGAAGGTTTGCACCAAAGAACTTTGAAGGAATTCTGCGTCGATATGTCAATGAATATGTGATTTGCATTGGGTGCAAGAGTCCAGATACTATCCTTTCAAAGGAGAACCGGCTTTTCTTTCTCAGATGCGAGAAGTGTGGTTCTGGACGGTCAGTTGCTCCAATTAAAGCTGGGTTTGTCGCTCGTGTTGGCCGGAGGAACACTGGGACATGA 813 43.54 MADEVQNDVTDQVADIAPFDPTKKKKKKKVVLQDPTDEIVDKLAEKTESLSVSDGLETTTFSGLKKKKKKPVEASSLNEDSADATEDLEDQAGEIEDREGIVLQYRYPWEGTDRDYEYEELLGRVFNILRENNPELAGDRRRTVMRPPQVLREGTKKTVFVNFMDLCKTMHRQPDHVMAFLLAELGTSGSLDGQQRLVVKGRFAPKNFEGILRRYVNEYVICIGCKSPDTILSKENRLFFLRCEKCGSGRSVAPIKAGFVARVGRRNTGT 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9571926 9586027 + MELO3C004807.2.1 Cme12g00547 343764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00547 270 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 219 254 IPR016190 GO:0003743|GO:0006413
Cme12g00547 270 MobiDBLite consensus disorder prediction 1 31 - -
Cme12g00547 270 Pfam Domain found in IF2B/IF5 139 248 IPR002735 GO:0003743|GO:0006413
Cme12g00547 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1 270 IPR045196 GO:0003743|GO:0006413
Cme12g00547 270 SMART eIF2Bneu4 140 249 IPR002735 GO:0003743|GO:0006413
Cme12g00547 270 MobiDBLite consensus disorder prediction 48 87 - -
Cme12g00547 270 MobiDBLite consensus disorder prediction 61 76 - -
Cme12g00547 270 Gene3D - 113 255 - -
Cme12g00547 270 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2 BETA SUBUNIT 1 270 - -
Cme12g00547 270 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 115 222 IPR016189 GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g01501 Cme-Chr3:24234776 Cme12g00547 Cme-Chr12:9571926 4.96E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00547 K03238 - csv:101220978 515.768