Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00582 ATGGCCATCGTAGACGGAGGCACTCGAACAGAGTCTGCAAATTCGATTATGGGAAGAGAAAAGCCGAAGATGGTCGTGATTATGGGGCCGACTGGTTCTGGGAAGTCACGTCTCGCTATCGATTTGGCTTCTTACTTCCCCGTCGAGATCATCAACGCCGACTCTATGCAGGTTTATCGAGGATTGGACGTTCTCACAAACAAAGTTCCCCCTGAAGATCAAAATGGAGTACCGCATCATCTTTTAGGTACTGTGAGTCCAGACGTTGAATTCACGGCTAAAGACTTCCGAAATTCTGCTGTTCATGTTATTGATGGCATAATTTCTCGTGGATGCTTGCCAATGATAGTGGGCGGAACAAATTATTATATACAGGCTCTTGTTAGTCTGTTTCTTCTGGATGATTCTGCAGAAAATGTTGGCGGAGGTTGTTCCATTTATCCTGGCGATGAAGAGCTGGGAGTTGATTTGGATGAGGGCAGAGATGGTTTGAAGTATGACCATAACCATCTTAAAGAGATTGATCCAGTTTCGGCTAACAGAATCCATCCTAATAACCACAGAAAAATAAATCAATACCTAAGTTTGTATTACCGCACTGGTGTTCTTCCCAGCACACTTTTTCAAGGAAAGGCTGCTGAGAATTGGGGTCAAGCCGATAGTTTCAGATATGATTGCTGCTTGATATGTGTTGATGCTTCTGTTCCACAACTTGACGAACATGTTGATTCTAGAGTTGACATCATGATGGCTGCTGGATTGCTTGATGAGGTCTATGACATTTACGATCCAAATGCAAACTATACTAGAGGATTGCGTCAAGCTATTGGTGTTCGGGAGTTTGAAGAATTTTTGAGATATTATATACCTGAAGGTGGATTCAAAAAAGAAAGTGCTGGGTTTAGTCCAAAAAATTTAATGGAGTGCAATGAGATTTTGAAAGAGAGTATGAGGTCAATCCTAAGTTCACCGTGTGATGGCCAACCCAGTTTGCTACTGAAAGAAGCCGTAGATAATGTAAAGTTGAATACTAGAAGACTGGTTCGTCGTCAGAGGAGGCAGCTAAAGAGACTGGAAACTCTGTTTGGATGGAAGATCCACTATGTTGATTCCACGGAATATATAACATGCAAAGTGGAGGATTCATGGACTCGACACGTCGTTGAACCAGCAGTTCAAATAATTAGATCTTTTCTTGCAGACGGTTTGGTGACCCAGACAATGAAACCGCATAGTTCAAAGCTAATCAAGGACTTGTGGACACAATATATATGTCAGGCTTGTGGGAGTAAAGTACTAAGAGGAGCACATGAATGGGAACAACACAATCAAGGTCGAACACATCGAAAACGAATGTATCGGCTTAAGAAGAAGTGTGAAGGGCTTTCCTTGCTGCACCAGAGACTACCTCCTCAAGAATAA 1422 42.48 MAIVDGGTRTESANSIMGREKPKMVVIMGPTGSGKSRLAIDLASYFPVEIINADSMQVYRGLDVLTNKVPPEDQNGVPHHLLGTVSPDVEFTAKDFRNSAVHVIDGIISRGCLPMIVGGTNYYIQALVSLFLLDDSAENVGGGCSIYPGDEELGVDLDEGRDGLKYDHNHLKEIDPVSANRIHPNNHRKINQYLSLYYRTGVLPSTLFQGKAAENWGQADSFRYDCCLICVDASVPQLDEHVDSRVDIMMAAGLLDEVYDIYDPNANYTRGLRQAIGVREFEEFLRYYIPEGGFKKESAGFSPKNLMECNEILKESMRSILSSPCDGQPSLLLKEAVDNVKLNTRRLVRRQRRQLKRLETLFGWKIHYVDSTEYITCKVEDSWTRHVVEPAVQIIRSFLADGLVTQTMKPHSSKLIKDLWTQYICQACGSKVLRGAHEWEQHNQGRTHRKRMYRLKKKCEGLSLLHQRLPPQE 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10296805 10309809 - MELO3C004783.2.1 Cme12g00582 343799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00582 473 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 401 - -
Cme12g00582 473 Gene3D Classic Zinc Finger 421 461 - -
Cme12g00582 473 Hamap tRNA dimethylallyltransferase [miaA]. 24 400 IPR018022 GO:0008033
Cme12g00582 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 130 IPR027417 -
Cme12g00582 473 Gene3D - 22 420 IPR027417 -
Cme12g00582 473 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 20 401 IPR039657 -
Cme12g00582 473 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 22 246 IPR027417 -
Cme12g00582 473 Pfam IPP transferase 57 356 - -
Cme12g00582 473 Gene3D - 151 211 - -
Cme12g00582 473 TIGRFAM miaA: tRNA dimethylallyltransferase 25 286 IPR018022 GO:0008033
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01937 Cme-Chr11:27417060 Cme12g00582 Cme-Chr12:10296805 5.56E-18 dispersed
Cme12g00582 Cme-Chr12:10296805 Cme06g00651 Cme-Chr6:4194184 6.48E-22 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00582 K00791 - csv:101202758 894.804