Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00613 ATGGCTACCATTCCAACAATTTCCTTAGACTTGCTCTCTTCTCTCCCCACAACAATTTCCCTTCTATTTTTCTCCTTTACGGTTGCCTTCTCTATTTTCTCCTTCTCTCTTTTCCTCCTCCGCCTTAACCCTTGTTGTAACTGCTCCTTGTGTCGCGCCTATCTTTCTTCTTCCTGGTCTTCCTCTTTCCCAAACTTATCCGATTGGTACACTCACCTTCTTTCCCACTCCCCCACCGCCACGCTCCACCTTCACGTCATCTCCAATATCGTAACCGCCAACCCCGACAACGTCCAACACATCCTTAAATCCAACTTCCATAACTACCCCAAAGGAAAACCCTTCTCTTCCATCCTTGGTGACCTTCTTGGTCATGGAATTTTCAATGTGGATGGTCATTCTTGGCGGTATCAACGCAAGATGGCGAGTTTGGAACTAGGGAGTTTGTCACTTCGGTCTCACGCGTTCGAGATTTTAACGACGGAGATTCGGAGTAGGTTGGTACCTACGGTGAATGGAATTGGGAGGACGATGGAGGTGGTGGATTTGCAAGATGTGTTTAGGAGGTTTTCGTTTGATAATATTTGTAGGTTTTCATTTGGGTTGGATCCGGGGTGTTTGAGGTTGTGGTTGCCGATGTCGGAATTCGCAGTGGCATTTGATTTGGCGTCGAGGTTGTCAGCGGAAAGAGCGATGGCACCATCGCCGATTATGTGGAGGATTAAGAAGATGCTGAGAGTGGGATCGGAGAGGAAGCTTAGGGAAGCGATTAAAATGGTAGATGGATTAGCGATGGAAGTTATAAGGCAAAGGAGGGAGATGGGGTTTTCTAATAGAAATGATCTTCTCTCTAGATTCATGGCTTCTACCAATGATGATAGATATCTTAGAGACATTGTCGTCAGCTTCCTCCTTGCCGGTCGGGACACGGTGGCGTCGGCGTTAACTAGCTTATTCTGGCTACTTTCCCAAAACCCGGAAGTCGAGACCGAAATTATCTCCGAGTCAGACCGGATCATGGGGCCGGATCGAGACAGGTTCCCCAGTTTCGACAATCTTAAAGAAATGCACTATCTCCAAGCAGTGGTCTACGAGAACATGCGCCTCTTTCCACCGGTTCAGTTCGACTCCAAGTTTGCCGAGGAAGACGACATCTTGCCCGATGGTACATTCGTCCAGAAGGGCACAAGAGTAACATACCACCCTTACGCCATGGGCCGAATGGACCGGATTTGGGGACTCGATTGTCTCCAGTTCAAACCGGAGAGGTGGCTTAAGAACGGTTACTTCACGCCTGAAAACCCCTTTAAGTTTCCGGTTTTTCAAGCCGGCTTAAGGGTCTGTCTAGGGAAGGAGCTAGCAGTGATGGATGTGAAATGTGTGGCGGTGGTATTGATTCGAAAGTTTAAGATCCGGTTAGCAGGAACCGATCGGATTGCTCGGTTTGCTCCCGGTCTAACGGCTAGCTGGAGAGGGGGATTACCGGTTCGAATTGAGGAAAGAGCCAATTGTTAA 1515 48.45 MATIPTISLDLLSSLPTTISLLFFSFTVAFSIFSFSLFLLRLNPCCNCSLCRAYLSSSWSSSFPNLSDWYTHLLSHSPTATLHLHVISNIVTANPDNVQHILKSNFHNYPKGKPFSSILGDLLGHGIFNVDGHSWRYQRKMASLELGSLSLRSHAFEILTTEIRSRLVPTVNGIGRTMEVVDLQDVFRRFSFDNICRFSFGLDPGCLRLWLPMSEFAVAFDLASRLSAERAMAPSPIMWRIKKMLRVGSERKLREAIKMVDGLAMEVIRQRREMGFSNRNDLLSRFMASTNDDRYLRDIVVSFLLAGRDTVASALTSLFWLLSQNPEVETEIISESDRIMGPDRDRFPSFDNLKEMHYLQAVVYENMRLFPPVQFDSKFAEEDDILPDGTFVQKGTRVTYHPYAMGRMDRIWGLDCLQFKPERWLKNGYFTPENPFKFPVFQAGLRVCLGKELAVMDVKCVAVVLIRKFKIRLAGTDRIARFAPGLTASWRGGLPVRIEERANC 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10954273 10956968 - MELO3C004742.2.1 Cme12g00613 343830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00613 504 PRINTS E-class P450 group I signature 295 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS E-class P450 group I signature 315 341 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS E-class P450 group I signature 438 448 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS E-class P450 group I signature 448 471 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 SUPERFAMILY Cytochrome P450 65 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PANTHER CYTOCHROME P450 21 500 - -
Cme12g00613 504 Pfam Cytochrome P450 76 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS P450 superfamily signature 306 323 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS P450 superfamily signature 439 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PRINTS P450 superfamily signature 448 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 Gene3D Cytochrome P450 59 503 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cme12g00613 504 PANTHER CYTOCHROME P450 94C1 21 500 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02412 Cme-Chr4:30766416 Cme12g00613 Cme-Chr12:10954273 0 dispersed
Cme06g01814 Cme-Chr6:21203204 Cme12g00613 Cme-Chr12:10954273 2.69E-121 dispersed
Cme12g00613 Cme-Chr12:10954273 Cme12g00101 Cme-Chr12:998669 2.32E-100 dispersed
Cme12g00613 Cme-Chr12:10954273 Cme01g02420 Cme-Chr1:32482869 4.58E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00613 K20624 - csv:101207724 962.985