Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00615 ATGGGTTTGAGAAATCACATGGCAGAAGAAAACATCTTTTGTCTTCAATCCCCAACTTTCATAGAATGGCTTAAACCACACAACCCTTCTTCTTCCTCTCCGACCTCCATTTCTCTTTCTTGCTCGTCTTCGTGCTCCTCTGATCGAGATTTGATCTCTCAGACGAGTGTCCAATGTGTTCCCGGGCGATGCCTCCCTTTGTTCACGGAGACGGAGGCCTCCGCGAAGAAGGACGAAGAAGAAACTCGAGCTGAAGATGGTGAAAGAAAATATATGGATGTCAAAGAGGAGGATGAAGATATGGAGAAAGTTGAAGTGGGTTTGCACATTGGGCTTCCAAATGTTGGTGATGTCTCTAATGTTTTTGGTGATGAGAAGAACATGAATGTTTGTGTAAAGAAAGAAGAAATCAACAGCTTGAAGAAAAGCTTCTCTAATTTTAATACTCAAGGAAGGTTTTGGATCCCAACACAAGCTCAAATCCTTGTTGGTCCTATGCAATTTGCTTGCGCTATCTGCAATAAATCATTTAATAGATACAATAACATGCAGATGCACATGTGGGGGCATGGATCTGAGTACAGAAAAGGGCCAGAATCTCTAAGAGGAACACAACCAGCAGCAATGCTAAGGCTTCCATGTTATTGCTGTGCTCAAGGCTGCAAGAACAACATTAACCATCCAAGAGCCAAGCCATTGAAGGACTTCAGAACCCTTCAAACTCATTACAAAAGAAAACACGGTTGTAAGCCATTTATGTGTAGAAAATGTGGCAAATCTTTGGCTGTTAAAGGAGATTGGAGAACCCATGAAAAGAATTGTGGTAAGCTATGGTATTGCTGCTGTGGCTCAGATTTCAAACACAAAAGATCCCTAAAAGATCATATTAGATCCTTTGGTAAAGGCCATTCACCTTGCTCCTCTCTTGATGATGAATGTCTCACTGGTTCAGATGATCAAGAAGATCATTTCTCTTAA 978 41.51 MGLRNHMAEENIFCLQSPTFIEWLKPHNPSSSSPTSISLSCSSSCSSDRDLISQTSVQCVPGRCLPLFTETEASAKKDEEETRAEDGERKYMDVKEEDEDMEKVEVGLHIGLPNVGDVSNVFGDEKNMNVCVKKEEINSLKKSFSNFNTQGRFWIPTQAQILVGPMQFACAICNKSFNRYNNMQMHMWGHGSEYRKGPESLRGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGCKPFMCRKCGKSLAVKGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIRSFGKGHSPCSSLDDECLTGSDDQEDHFS 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11101277 11104464 - MELO3C004740.2.1 Cme12g00615 343832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00615 325 SMART c2h2final6 252 272 IPR013087 -
Cme12g00615 325 SMART c2h2final6 215 247 IPR013087 -
Cme12g00615 325 SMART c2h2final6 168 190 IPR013087 -
Cme12g00615 325 Coils Coil 77 97 - -
Cme12g00615 325 PANTHER ZINC FINGER PROTEIN WIP3-LIKE 1 323 - -
Cme12g00615 325 SUPERFAMILY beta-beta-alpha zinc fingers 159 191 IPR036236 -
Cme12g00615 325 PANTHER ZINC FINGER PROTEIN WIP2 1 323 IPR043584 GO:0003700|GO:0010468
Cme12g00615 325 Gene3D Classic Zinc Finger 167 190 - -
Cme12g00615 325 ProSiteProfiles Zinc finger C2H2 type domain profile. 168 195 IPR013087 -
Cme12g00615 325 ProSitePatterns Zinc finger C2H2 type domain signature. 170 190 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g01721 Cme-Chr8:19518035 Cme12g00615 Cme-Chr12:11101277 8.24E-106 dispersed
Cme09g00789 Cme-Chr9:9715712 Cme12g00615 Cme-Chr12:11101277 5.90E-97 dispersed
Cme12g00615 Cme-Chr12:11101277 Cme12g00482 Cme-Chr12:8275347 1.10E-21 dispersed
Cme12g00615 Cme-Chr12:11101277 Cme04g02208 Cme-Chr4:29302073 1.56E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42303 None None None None Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00615 - - csv:101208459 601.668