Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00629 ATGGCCAATCAACACTCTGCAACTTTGCCAAATTTCCATGGAATAATTCATCATAATCCTTCTCTTCCTTTCATAAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCTATTGTTTTGCAGGGGGTTAAGCTTGGAAATGATGAACCCAAATCTCCAAATTTTCTTACAGGAAGGCCTGCAGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGCACAGATTCAGGATCAGCTAATATAAACAATACTCTCACAAGCAAAATAGAATTAGAAATGGAATCTGGATCACCAATAAATAGAAGAACGTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCATCATCATCATCTTCTTCATCTTCAACATCTTCAATCAGAATTTGAAGATGATGCTTTGAGAACAGAAGCATCGTCACAACAAAATCAATCTCCACTCAAAGAAAAGAGGAAAGGAGGTGGTTCAACTTCGGAGAGACAGCTTGATGCCAAGACACTGAGACGATTGGCTCAAAACAGAGAAGCGGCAAGAAAGAGCCGATTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCTAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCTCGTTCTCAGGGATTGTTTGTAGGTGCTTGCGGTGGCGTAATGGGTGGCAATATCAGCTCTGGAGCTGCAATATTTGACATGGAGTACGCACGGTGGCTAGACGAAGACCACCGTTTGATGGCAGAGCTACGGGCCGCACTACAGGGTCATCTCCCCGATGGCGATCTTCGGGCAATAGTAGACAGTTACATCTCTCACTACGACGAAATATTTCACCTGAAAGGCGTGGCAGCAAAATCGGACGTGTTTCATTTGATTACAGGAATGTGGATGACTCCAGCAGAGCGTTGTTTCCTGTGGATTGGCGGGTTTCGACCATCAAAACTCATAGAGATGCTAATTCCACAAATAGACACATTAACGGAGCAACAAGCAATGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAAGGCCTTGAGCAGTTGCAGCACTCTCTCATTATCACTATCGCCGGCACCGCCGTTGTCGACGGTATCAATCATATGGCTCTTGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACACTTCATCAGTTACATCGGATATTGACAGTACGACAGGCAGCTAGATGTTTTGTGGTAATTGGAGAGTATTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTGTCACGACCAAGAGAGAGCAGCTGCTTGAACGATGAAAGTTCATGCCAAACAACAACAGAGCTGCAAATGATTCAGAATTCCCACACCCATTTCCCAAACTTTTGA 1473 43.79 MANQHSATLPNFHGIIHHNPSLPFINPEGSAFDFGELEEAIVLQGVKLGNDEPKSPNFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANINNTLTSKIELEMESGSPINRRTCSSNQGLFDQNHHHHHHLLHLQHLQSEFEDDALRTEASSQQNQSPLKEKRKGGGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFVGACGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVDSYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQIDTLTEQQAMGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTVRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDESSCQTTTELQMIQNSHTHFPNF 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11347536 11352327 - MELO3C004728.2.1 Cme12g00629 343846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00629 490 SUPERFAMILY Leucine zipper domain 185 226 IPR046347 GO:0003700|GO:0006355
Cme12g00629 490 MobiDBLite consensus disorder prediction 79 99 - -
Cme12g00629 490 Pfam bZIP transcription factor 184 225 IPR004827 GO:0003700|GO:0006355
Cme12g00629 490 PANTHER TRANSCRIPTION FACTOR TGA9 55 468 - -
Cme12g00629 490 CDD bZIP_HBP1b-like 185 236 - -
Cme12g00629 490 PANTHER TRANSCRIPTION FACTOR TGA9 55 468 - -
Cme12g00629 490 Gene3D - 184 232 - -
Cme12g00629 490 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 227 IPR004827 GO:0003700|GO:0006355
Cme12g00629 490 Pfam Seed dormancy control 268 342 IPR025422 GO:0006351|GO:0043565
Cme12g00629 490 MobiDBLite consensus disorder prediction 152 184 - -
Cme12g00629 490 SMART brlzneu 181 247 IPR004827 GO:0003700|GO:0006355
Cme12g00629 490 MobiDBLite consensus disorder prediction 156 171 - -
Cme12g00629 490 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Cme12g00629 490 ProSiteProfiles DOG1 domain profile. 250 458 IPR025422 GO:0006351|GO:0043565
Cme12g00629 490 Coils Coil 204 231 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02220 Cme-Chr4:29379807 Cme12g00629 Cme-Chr12:11347536 1.14E-103 dispersed
Cme10g00013 Cme-Chr10:143381 Cme12g00629 Cme-Chr12:11347536 2.00E-127 dispersed
Cme11g01914 Cme-Chr11:27252412 Cme12g00629 Cme-Chr12:11347536 2.87E-157 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42304 PF14144 DOG1 6.10E-31 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00629 K14431 - csv:101204604 946.036