Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g00629 | ATGGCCAATCAACACTCTGCAACTTTGCCAAATTTCCATGGAATAATTCATCATAATCCTTCTCTTCCTTTCATAAATCCAGAAGGCTCAGCTTTTGATTTTGGAGAGCTGGAAGAAGCTATTGTTTTGCAGGGGGTTAAGCTTGGAAATGATGAACCCAAATCTCCAAATTTTCTTACAGGAAGGCCTGCAGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACATTGGGAGGAGGTTCAAAGTCAGAGAGCACAGATTCAGGATCAGCTAATATAAACAATACTCTCACAAGCAAAATAGAATTAGAAATGGAATCTGGATCACCAATAAATAGAAGAACGTGTTCTTCAAATCAAGGATTATTTGATCAAAATCATCATCATCATCATCATCTTCTTCATCTTCAACATCTTCAATCAGAATTTGAAGATGATGCTTTGAGAACAGAAGCATCGTCACAACAAAATCAATCTCCACTCAAAGAAAAGAGGAAAGGAGGTGGTTCAACTTCGGAGAGACAGCTTGATGCCAAGACACTGAGACGATTGGCTCAAAACAGAGAAGCGGCAAGAAAGAGCCGATTGAGGAAGAAGGCTTATATTCAGCAGCTAGAGTCTAGTAGAATCAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCTCGTTCTCAGGGATTGTTTGTAGGTGCTTGCGGTGGCGTAATGGGTGGCAATATCAGCTCTGGAGCTGCAATATTTGACATGGAGTACGCACGGTGGCTAGACGAAGACCACCGTTTGATGGCAGAGCTACGGGCCGCACTACAGGGTCATCTCCCCGATGGCGATCTTCGGGCAATAGTAGACAGTTACATCTCTCACTACGACGAAATATTTCACCTGAAAGGCGTGGCAGCAAAATCGGACGTGTTTCATTTGATTACAGGAATGTGGATGACTCCAGCAGAGCGTTGTTTCCTGTGGATTGGCGGGTTTCGACCATCAAAACTCATAGAGATGCTAATTCCACAAATAGACACATTAACGGAGCAACAAGCAATGGGAATATGTAATTTGCAAAGATCTTCACAAGAAACAGAGGATGCTCTTTATCAAGGCCTTGAGCAGTTGCAGCACTCTCTCATTATCACTATCGCCGGCACCGCCGTTGTCGACGGTATCAATCATATGGCTCTTGCCGCCGGCAAGCTCTCCAATCTTGAAGGCTTCATCCGCCAGGCTGATATGTTGAGACAACAAACACTTCATCAGTTACATCGGATATTGACAGTACGACAGGCAGCTAGATGTTTTGTGGTAATTGGAGAGTATTATGGAAGACTTCGAGCTCTTAGTTCCTTGTGGGTGTCACGACCAAGAGAGAGCAGCTGCTTGAACGATGAAAGTTCATGCCAAACAACAACAGAGCTGCAAATGATTCAGAATTCCCACACCCATTTCCCAAACTTTTGA | 1473 | 43.79 | MANQHSATLPNFHGIIHHNPSLPFINPEGSAFDFGELEEAIVLQGVKLGNDEPKSPNFLTGRPAATLEMFPSWPIRFQQTPTLGGGSKSESTDSGSANINNTLTSKIELEMESGSPINRRTCSSNQGLFDQNHHHHHHLLHLQHLQSEFEDDALRTEASSQQNQSPLKEKRKGGGSTSERQLDAKTLRRLAQNREAARKSRLRKKAYIQQLESSRIKLSQLEQDLHRARSQGLFVGACGGVMGGNISSGAAIFDMEYARWLDEDHRLMAELRAALQGHLPDGDLRAIVDSYISHYDEIFHLKGVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQIDTLTEQQAMGICNLQRSSQETEDALYQGLEQLQHSLIITIAGTAVVDGINHMALAAGKLSNLEGFIRQADMLRQQTLHQLHRILTVRQAARCFVVIGEYYGRLRALSSLWVSRPRESSCLNDESSCQTTTELQMIQNSHTHFPNF | 490 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 11347536 | 11352327 | - | MELO3C004728.2.1 | Cme12g00629 | 343846 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g00629 | 490 | SUPERFAMILY | Leucine zipper domain | 185 | 226 | IPR046347 | GO:0003700|GO:0006355 | |
Cme12g00629 | 490 | MobiDBLite | consensus disorder prediction | 79 | 99 | - | - | |
Cme12g00629 | 490 | Pfam | bZIP transcription factor | 184 | 225 | IPR004827 | GO:0003700|GO:0006355 | |
Cme12g00629 | 490 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 55 | 468 | - | - | |
Cme12g00629 | 490 | CDD | bZIP_HBP1b-like | 185 | 236 | - | - | |
Cme12g00629 | 490 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 55 | 468 | - | - | |
Cme12g00629 | 490 | Gene3D | - | 184 | 232 | - | - | |
Cme12g00629 | 490 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 183 | 227 | IPR004827 | GO:0003700|GO:0006355 | |
Cme12g00629 | 490 | Pfam | Seed dormancy control | 268 | 342 | IPR025422 | GO:0006351|GO:0043565 | |
Cme12g00629 | 490 | MobiDBLite | consensus disorder prediction | 152 | 184 | - | - | |
Cme12g00629 | 490 | SMART | brlzneu | 181 | 247 | IPR004827 | GO:0003700|GO:0006355 | |
Cme12g00629 | 490 | MobiDBLite | consensus disorder prediction | 156 | 171 | - | - | |
Cme12g00629 | 490 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 188 | 203 | IPR004827 | GO:0003700|GO:0006355 | |
Cme12g00629 | 490 | ProSiteProfiles | DOG1 domain profile. | 250 | 458 | IPR025422 | GO:0006351|GO:0043565 | |
Cme12g00629 | 490 | Coils | Coil | 204 | 231 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g02220 | Cme-Chr4:29379807 | Cme12g00629 | Cme-Chr12:11347536 | 1.14E-103 | dispersed | |
Cme10g00013 | Cme-Chr10:143381 | Cme12g00629 | Cme-Chr12:11347536 | 2.00E-127 | dispersed | |
Cme11g01914 | Cme-Chr11:27252412 | Cme12g00629 | Cme-Chr12:11347536 | 2.87E-157 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42304 | PF14144 | DOG1 | 6.10E-31 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g00629 | K14431 | - | csv:101204604 | 946.036 |