Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00788 ATGGCCTCAAAGTCGAATTTGAAACCTTCTGCAAAGCAACCTAAGGTGATTACCGGCGTTAAAGCGACTGATGTGAGTGATCTAAAGTCCTTACCTTCACAAACTTCACTGGGAAACAAAATTGGTTCTGTTATCTCTGGAGATGTATTGAATTCCACACAGAAATCCTTGAATCAGTCTACTTTGACTGATTCATCAAATACCAAATCCTCTAGTTTTAATCATAAAGTGTCTACTGAGTCATATAATCAGAAAATTAAAGAAAATTCCTCAAAGTCTGACGCTAAGACAGAGGGTCTTAACGGGACTCGGGGCTTAGCGGAAAACTCTATAGATTCCAAGAAGAAAATATCAGAATGTGGGAGTGGGAAGGATAGTTCAGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTGCCAAGACGAGTGGAAGTGCAAAAATTAGTGACCGTGTTGAGATGGTTGAAAGTGGCAAGAGCAGCATGTGTCGTGGAAGCACAAGCAGCGACATCAGTGACGAAAGTACTTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGATGGGATATTGGGATTAGGTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATTGGAAGCGTCTACCTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTGGCAAGTCGAAAGAAGTTGCTTCGAGCTCAGACTGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCGACATTATATACTCATTTTGAGACTGATAAATTTTCATGCTTAGTGATGGAGTTTTGCCCCGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTACCGAACAGGCAGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTCGAGTATCTTCATATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACATATAATGCTTTCAGACTTTGATCTTTCACTAAGATGTGCAGTTAGTCCAACATTGGTGAAGGGCTCATGTTCCGAGTCTGAACCTTTGAGAAAGAATTCAACTTATTGTGTTCAACCGGCTTGTATTGAACCTTCCTGCATCCAGCCCTCCTGTGTAGTTCCCACGACATGCTTCACTCCCCGACTTTTCTCTAGCAAGTCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAATCAGGTAACGCCTTTGCCAGAGCTCATTGCAGAGCCTACGGAGGCAAGGTCAATGTCATTTGTTGGCACACATGAATATTTGGCACCGGAGATCATTAAAGGCGAAGGCCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATATTCCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAATGTGGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAACAACATCCTTTTTTTGAAGGTGTTAACTGGGCACTGATACGTTGCGCTTCACCACCAGAAGTACCAAAGCCTGTCGAGATTGAGAGGATACCCTCACCAGCACCTCCAGTCAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCCGATTCCAAATCATCTGATAATTATCTCGAGTTCGATTTCTTTTAG 1824 43.7 MASKSNLKPSAKQPKVITGVKATDVSDLKSLPSQTSLGNKIGSVISGDVLNSTQKSLNQSTLTDSSNTKSSSFNHKVSTESYNQKIKENSSKSDAKTEGLNGTRGLAENSIDSKKKISECGSGKDSSVSAKVSDGTNSIAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFTEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSTYCVQPACIEPSCIQPSCVVPTTCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAVMARPGPDSKSSDNYLEFDFF 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14316880 14322465 + MELO3C026094.2.1 Cme12g00788 344005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00788 607 ProSiteProfiles Protein kinase domain profile. 213 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00788 607 MobiDBLite consensus disorder prediction 56 149 - -
Cme12g00788 607 Pfam Protein kinase domain 447 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00788 607 Pfam Protein kinase domain 214 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00788 607 SMART serkin_6 213 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00788 607 Gene3D Transferase(Phosphotransferase) domain 1 297 399 - -
Cme12g00788 607 Gene3D Transferase(Phosphotransferase) domain 1 444 568 - -
Cme12g00788 607 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 3 607 - -
Cme12g00788 607 Gene3D Phosphorylase Kinase; domain 1 212 296 - -
Cme12g00788 607 PANTHER FLIPPASE KINASE 1-RELATED 3 607 - -
Cme12g00788 607 MobiDBLite consensus disorder prediction 574 599 - -
Cme12g00788 607 CDD STKc_phototropin_like 212 573 - -
Cme12g00788 607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Cme12g00788 607 SUPERFAMILY Protein kinase-like (PK-like) 189 578 IPR011009 -
Cme12g00788 607 MobiDBLite consensus disorder prediction 122 145 - -
Cme12g00788 607 MobiDBLite consensus disorder prediction 56 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01837 Cme-Chr4:26102624 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme06g00013 Cme-Chr6:92673 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme08g01025 Cme-Chr8:6653770 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme08g01748 Cme-Chr8:20058730 Cme12g00788 Cme-Chr12:14316880 8.96E-176 dispersed
Cme11g01748 Cme-Chr11:25620429 Cme12g00788 Cme-Chr12:14316880 5.90E-112 dispersed
Cme11g01897 Cme-Chr11:27108962 Cme12g00788 Cme-Chr12:14316880 0 dispersed
Cme11g01898 Cme-Chr11:27120999 Cme12g00788 Cme-Chr12:14316880 6.52E-149 dispersed
Cme12g00788 Cme-Chr12:14316880 Cme12g01135 Cme-Chr12:19370549 1.15E-130 dispersed
Cme12g00788 Cme-Chr12:14316880 Cme08g01220 Cme-Chr8:8594012 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65300 PF00069 Pkinase 5.30E-37 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00788 K08286 - csv:101213662 1150.58