Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g00788 | ATGGCCTCAAAGTCGAATTTGAAACCTTCTGCAAAGCAACCTAAGGTGATTACCGGCGTTAAAGCGACTGATGTGAGTGATCTAAAGTCCTTACCTTCACAAACTTCACTGGGAAACAAAATTGGTTCTGTTATCTCTGGAGATGTATTGAATTCCACACAGAAATCCTTGAATCAGTCTACTTTGACTGATTCATCAAATACCAAATCCTCTAGTTTTAATCATAAAGTGTCTACTGAGTCATATAATCAGAAAATTAAAGAAAATTCCTCAAAGTCTGACGCTAAGACAGAGGGTCTTAACGGGACTCGGGGCTTAGCGGAAAACTCTATAGATTCCAAGAAGAAAATATCAGAATGTGGGAGTGGGAAGGATAGTTCAGTTTCTGCCAAAGTCAGTGATGGAACAAACAGTATTGCCAAGACGAGTGGAAGTGCAAAAATTAGTGACCGTGTTGAGATGGTTGAAAGTGGCAAGAGCAGCATGTGTCGTGGAAGCACAAGCAGCGACATCAGTGACGAAAGTACTTGTAGCAGCTTTAGTAGTAGTATCAGTAAGCCTCACAAAGCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGATGGGATATTGGGATTAGGTCATTTTAGACTATTGAAGAGACTGGGATGTGGGGATATTGGAAGCGTCTACCTGTCGGAGTTGAGTGGTACTAAATGTTATTTTGCTATGAAGGTCATGGACAAAGGGTCTCTGGCAAGTCGAAAGAAGTTGCTTCGAGCTCAGACTGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCGACATTATATACTCATTTTGAGACTGATAAATTTTCATGCTTAGTGATGGAGTTTTGCCCCGGGGGAGACTTGCACACTCTAAGGCAGAGGCAGCCAGGGAAGCATTTTACCGAACAGGCAGTGAAATTTTATGTAGCAGAGGTCCTCCTAGCACTCGAGTATCTTCATATGCTTGGGATTGTATACCGGGACCTTAAGCCTGAGAATGTTCTTGTGAGGGAAGATGGACATATAATGCTTTCAGACTTTGATCTTTCACTAAGATGTGCAGTTAGTCCAACATTGGTGAAGGGCTCATGTTCCGAGTCTGAACCTTTGAGAAAGAATTCAACTTATTGTGTTCAACCGGCTTGTATTGAACCTTCCTGCATCCAGCCCTCCTGTGTAGTTCCCACGACATGCTTCACTCCCCGACTTTTCTCTAGCAAGTCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAATCAGGTAACGCCTTTGCCAGAGCTCATTGCAGAGCCTACGGAGGCAAGGTCAATGTCATTTGTTGGCACACATGAATATTTGGCACCGGAGATCATTAAAGGCGAAGGCCATGGAAGTGCTGTTGACTGGTGGACTTTTGGAATATTCCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAGGGATCTGGGAATCGAGCCACGTTGTTCAATGTGGTTGGTCAGCCTTTGCGGTTTCCTGAATCACCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTTGTCAAGGAACCACAGCATAGATTAGCTTACAAACGAGGGGCAACTGAGATCAAACAACATCCTTTTTTTGAAGGTGTTAACTGGGCACTGATACGTTGCGCTTCACCACCAGAAGTACCAAAGCCTGTCGAGATTGAGAGGATACCCTCACCAGCACCTCCAGTCAGTGGAAAAGCTGTAATGGCTAGACCTGGTCCCGATTCCAAATCATCTGATAATTATCTCGAGTTCGATTTCTTTTAG | 1824 | 43.7 | MASKSNLKPSAKQPKVITGVKATDVSDLKSLPSQTSLGNKIGSVISGDVLNSTQKSLNQSTLTDSSNTKSSSFNHKVSTESYNQKIKENSSKSDAKTEGLNGTRGLAENSIDSKKKISECGSGKDSSVSAKVSDGTNSIAKTSGSAKISDRVEMVESGKSSMCRGSTSSDISDESTCSSFSSSISKPHKANDLRWEAIQAVRARDGILGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKHFTEQAVKFYVAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSTYCVQPACIEPSCIQPSCVVPTTCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPEVPKPVEIERIPSPAPPVSGKAVMARPGPDSKSSDNYLEFDFF | 607 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 14316880 | 14322465 | + | MELO3C026094.2.1 | Cme12g00788 | 344005 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g00788 | 607 | ProSiteProfiles | Protein kinase domain profile. | 213 | 550 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g00788 | 607 | MobiDBLite | consensus disorder prediction | 56 | 149 | - | - | |
Cme12g00788 | 607 | Pfam | Protein kinase domain | 447 | 550 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g00788 | 607 | Pfam | Protein kinase domain | 214 | 366 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g00788 | 607 | SMART | serkin_6 | 213 | 550 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g00788 | 607 | Gene3D | Transferase(Phosphotransferase) domain 1 | 297 | 399 | - | - | |
Cme12g00788 | 607 | Gene3D | Transferase(Phosphotransferase) domain 1 | 444 | 568 | - | - | |
Cme12g00788 | 607 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 3 | 607 | - | - | |
Cme12g00788 | 607 | Gene3D | Phosphorylase Kinase; domain 1 | 212 | 296 | - | - | |
Cme12g00788 | 607 | PANTHER | FLIPPASE KINASE 1-RELATED | 3 | 607 | - | - | |
Cme12g00788 | 607 | MobiDBLite | consensus disorder prediction | 574 | 599 | - | - | |
Cme12g00788 | 607 | CDD | STKc_phototropin_like | 212 | 573 | - | - | |
Cme12g00788 | 607 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 334 | 346 | IPR008271 | GO:0004672|GO:0006468 | |
Cme12g00788 | 607 | SUPERFAMILY | Protein kinase-like (PK-like) | 189 | 578 | IPR011009 | - | |
Cme12g00788 | 607 | MobiDBLite | consensus disorder prediction | 122 | 145 | - | - | |
Cme12g00788 | 607 | MobiDBLite | consensus disorder prediction | 56 | 86 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme04g01837 | Cme-Chr4:26102624 | Cme12g00788 | Cme-Chr12:14316880 | 0 | dispersed | |
Cme06g00013 | Cme-Chr6:92673 | Cme12g00788 | Cme-Chr12:14316880 | 0 | dispersed | |
Cme08g01025 | Cme-Chr8:6653770 | Cme12g00788 | Cme-Chr12:14316880 | 0 | dispersed | |
Cme08g01748 | Cme-Chr8:20058730 | Cme12g00788 | Cme-Chr12:14316880 | 8.96E-176 | dispersed | |
Cme11g01748 | Cme-Chr11:25620429 | Cme12g00788 | Cme-Chr12:14316880 | 5.90E-112 | dispersed | |
Cme11g01897 | Cme-Chr11:27108962 | Cme12g00788 | Cme-Chr12:14316880 | 0 | dispersed | |
Cme11g01898 | Cme-Chr11:27120999 | Cme12g00788 | Cme-Chr12:14316880 | 6.52E-149 | dispersed | |
Cme12g00788 | Cme-Chr12:14316880 | Cme12g01135 | Cme-Chr12:19370549 | 1.15E-130 | dispersed | |
Cme12g00788 | Cme-Chr12:14316880 | Cme08g01220 | Cme-Chr8:8594012 | 0 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65300 | PF00069 | Pkinase | 5.30E-37 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g00788 | K08286 | - | csv:101213662 | 1150.58 |