Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00812 ATGGACTCTGGTGATGTCGAGCAATCCTTGCTTCTTAAGTTGTTTGATTCTGATAAGAGGAATTCTCTCCTGAGAAGGAAATCTAATCGACATGGTAGTTTTTCACATTCAGTAGAAAATAATAAACCACAAAATTATGATGTAGCTCATCAACGTGTTGCTGTTTCACAAATTAGTTTTAGGAAAGTATTTGTTCTTCTAGCGACTTATTTAGGAGGAGGCACATTTTGTTTTTTCCTTGTTCGGGATCAGATCACTGGAAAGAAAACAAATGGGGTTGTCGATTCCATTTACTTTTGTGTTGTGACAATGACCACCGTTGGGTATGGTGATCTTGTTCCTAATAGCATGGTTGCAAAACTACTTGCATGTGTTTATGTTTTCACTGGAATGACTCTTGGTGGGATGATTCTTAGCAAGGCAGCGGATTACATTGTCGAAAAGCAGGAAATTCTTCTGGTTAAGGCCATGCGCATGAGGAAAAAGATCAGCTCCAGTGAGATCCTTCAGGAATCTGAGGAAAACAAATTGAAATACAAATTCATTATGACTGGAATCCTCCTTTGGGCTCTTATCGTTGTTGGAACCCTTTTCTTGACTGTGGTTGAGAACCTAGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACGACTCTCGGCTATGGGGATCAGAGCTTCTCTACTACAGCCGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCGGTACCATCTGCTTAGCACAGTTTTTTCTGTACCTTGCAGAATTACACACAGAAAGGAGACAAGACTCACTGATTAATTGGGTTCTCAACCGAAGCCTCACATATTCGGATCTTGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCAGAATTTGTAATATATAAACTAAAGGAAATGGGGAAGATCAATCAGGAAGACGTTTCTCCCATACTTGACACTTTTAAGAAGCTTGACATTGATCAATCAGGATGTCTAACAGAAGCTGATATAGTAATCTCATAG 1020 39.51 MDSGDVEQSLLLKLFDSDKRNSLLRRKSNRHGSFSHSVENNKPQNYDVAHQRVAVSQISFRKVFVLLATYLGGGTFCFFLVRDQITGKKTNGVVDSIYFCVVTMTTVGYGDLVPNSMVAKLLACVYVFTGMTLGGMILSKAADYIVEKQEILLVKAMRMRKKISSSEILQESEENKLKYKFIMTGILLWALIVVGTLFLTVVENLEFTDAFYCVCSTITTLGYGDQSFSTTAGRVFAVIWIMSGTICLAQFFLYLAELHTERRQDSLINWVLNRSLTYSDLEEADLDHDKVVSAAEFVIYKLKEMGKINQEDVSPILDTFKKLDIDQSGCLTEADIVIS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 14658348 14660816 - MELO3C026072.2.1 Cme12g00812 344029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00812 339 Gene3D - 157 269 - -
Cme12g00812 339 SUPERFAMILY Voltage-gated potassium channels 56 162 - -
Cme12g00812 339 ProSitePatterns EF-hand calcium-binding domain. 324 336 IPR018247 -
Cme12g00812 339 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 21 336 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cme12g00812 339 SUPERFAMILY EF-hand 269 336 IPR011992 -
Cme12g00812 339 Gene3D - 55 156 - -
Cme12g00812 339 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 21 336 - -
Cme12g00812 339 SUPERFAMILY Voltage-gated potassium channels 156 260 - -
Cme12g00812 339 Pfam Ion channel 67 146 IPR013099 -
Cme12g00812 339 Pfam Ion channel 188 257 IPR013099 -
Cme12g00812 339 Gene3D - 280 338 - -
Cme12g00812 339 PRINTS Two pore domain K+ channel signature 219 228 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cme12g00812 339 PRINTS Two pore domain K+ channel signature 102 130 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00925 Cme-Chr1:10731582 Cme12g00812 Cme-Chr12:14658348 3.53E-126 dispersed
Cme08g00165 Cme-Chr8:1160920 Cme12g00812 Cme-Chr12:14658348 2.23E-64 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00812 K05389 - csv:101214791 616.69