Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00862 ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTATTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGGATTGAGGCATGTGCCATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACCTTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGTCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACGTTCCTTCGTGATCGTATCGCGAAAGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGACTCATGTTTCAAAGTCTCGTTGCTGGAGCAACCCCACCTCCAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGCTAGTTGATCAAAAAATGGCTGATATTGGTAAGAGAATGGAATCACTTACAGTAAACCGATCGTCGTCACATGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGGTAATGATGAAGATCATATGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGCTTTGGGGAGTATGATAATCATGGTACTTTTTGGTCAAATAATGTCATTTTCCCTTGA 660 42.73 MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQSLVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQGGNDEDHMGFNIGDDVIQLPSFGEYDNHGTFWSNNVIFP 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15403219 15403878 + MELO3C021692.2.1 Cme12g00862 344079

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00862 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cme12g00862 219 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cme12g00862 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 Coils Coil 87 114 - -
Cme12g00862 219 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cme12g00862 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 - -
Cme12g00862 219 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 167 - -
Cme12g00862 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00862 - - - csv:101219796 397.897
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00013 Cme-Chr2:188002 Cme12g00862 Cme-Chr12:15403219 3.92E-78 dispersed
Cme04g02313 Cme-Chr4:30071863 Cme12g00862 Cme-Chr12:15403219 5.66E-32 dispersed
Cme12g00862 Cme-Chr12:15403219 Cme11g00042 Cme-Chr11:372198 2.30E-11 dispersed
Cme12g00862 Cme-Chr12:15403219 Cme07g02243 Cme-Chr7:26544560 1.97E-10 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
Cme07g02216 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 2.0e-50 196.4
Cme02g00013 . 1 157 Type I MADS-box Gene Family AT5G48670 66.2 2.1e-53 206.5
Cme12g00862 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 8.6e-47 184.5
Cme07g02216 . 4 159 Type I MADS-box Gene Family AT2G24840 55.3 1.2e-38 157.1
Cme08g01835 . 1 198 Type I MADS-box Gene Family AT1G77950 53.1 1.0e-47 187.2
Cme08g01835 . 1 251 Type I MADS-box Gene Family AT1G77980 51.5 1.1e-55 214.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001414 5 4 2 4 3 2 4 2 2 2 2 2 2 2 3 2 2 3 4 2 2 3 2 2 2 2 2 2 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42311 PF00319 SRF-TF 2.20E-17 No_clan Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g00862 Cme_Chr12 FPKM 8.455324 12.383186 14.220152 15.828555 12.727339 12.235807 12.201023 14.516749 14.885334 16.081551