Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g00862 | ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTATTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGGATTGAGGCATGTGCCATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACCTTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGTCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACGTTCCTTCGTGATCGTATCGCGAAAGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGACTCATGTTTCAAAGTCTCGTTGCTGGAGCAACCCCACCTCCAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGCTAGTTGATCAAAAAATGGCTGATATTGGTAAGAGAATGGAATCACTTACAGTAAACCGATCGTCGTCACATGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGGTAATGATGAAGATCATATGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGCTTTGGGGAGTATGATAATCATGGTACTTTTTGGTCAAATAATGTCATTTTCCCTTGA | 660 | 42.73 | MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQSLVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQGGNDEDHMGFNIGDDVIQLPSFGEYDNHGTFWSNNVIFP | 219 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 15403219 | 15403878 | + | MELO3C021692.2.1 | Cme12g00862 | 344079 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g00862 | 219 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g00862 | 219 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g00862 | 219 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g00862 | 219 | SUPERFAMILY | SRF-like | 2 | 95 | IPR036879 | GO:0003677|GO:0046983 | |
Cme12g00862 | 219 | CDD | MADS_SRF_like | 2 | 85 | IPR033897 | GO:0000981|GO:0000987|GO:0045944 | |
Cme12g00862 | 219 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g00862 | 219 | Coils | Coil | 87 | 114 | - | - | |
Cme12g00862 | 219 | Gene3D | - | 13 | 97 | IPR036879 | GO:0003677|GO:0046983 | |
Cme12g00862 | 219 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 167 | - | - | |
Cme12g00862 | 219 | ProSiteProfiles | MADS-box domain profile. | 1 | 52 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g00862 | 219 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 | 1 | 167 | - | - | |
Cme12g00862 | 219 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme02g00013 | Cme-Chr2:188002 | Cme12g00862 | Cme-Chr12:15403219 | 3.92E-78 | dispersed | |
Cme04g02313 | Cme-Chr4:30071863 | Cme12g00862 | Cme-Chr12:15403219 | 5.66E-32 | dispersed | |
Cme12g00862 | Cme-Chr12:15403219 | Cme11g00042 | Cme-Chr11:372198 | 2.30E-11 | dispersed | |
Cme12g00862 | Cme-Chr12:15403219 | Cme07g02243 | Cme-Chr7:26544560 | 1.97E-10 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42311 | PF00319 | SRF-TF | 2.20E-17 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g00862 | - | - | csv:101219796 | 397.897 |