Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00862 ATGACAAGAAAGAAGGTGAAACTTGCATACATTACAAATGATGCATCAAGAAAAGCCACATTCAAGAAAAGGAAAAAGGGTTTATTGAAGAAGCTGGCTGAGCTTACCACTCTATGTGGGATTGAGGCATGTGCCATAATCTTCAATCCCTCCAATTCACAACCTGACCTTTGGCCCTCCACCTTAGGCCTCCAAAAGGTTCTCTCTAAGTTCAAAAGTCTACCAGAGATGGAGCAATGCAAGAAGATGGTCAACCAAGAGACGTTCCTTCGTGATCGTATCGCGAAAGCTGCTGACCAACTCAAGAAGCTACAAAGGGAGAATCGTGAGAAGGAGATCACTCGACTCATGTTTCAAAGTCTCGTTGCTGGAGCAACCCCACCTCCAGATCTCAATGTCATCGATTTGAATGACCTTGGTTGGCTAGTTGATCAAAAAATGGCTGATATTGGTAAGAGAATGGAATCACTTACAGTAAACCGATCGTCGTCACATGTGGCGACAAATGAGCCGTCGTGGTTTATGGAGATGGTGAATCAAGGAGGTAATGATGAAGATCATATGGGATTCAATATTGGGGATGATGTGATTCAACTTCCTAGCTTTGGGGAGTATGATAATCATGGTACTTTTTGGTCAAATAATGTCATTTTCCCTTGA 660 42.73 MTRKKVKLAYITNDASRKATFKKRKKGLLKKLAELTTLCGIEACAIIFNPSNSQPDLWPSTLGLQKVLSKFKSLPEMEQCKKMVNQETFLRDRIAKAADQLKKLQRENREKEITRLMFQSLVAGATPPPDLNVIDLNDLGWLVDQKMADIGKRMESLTVNRSSSHVATNEPSWFMEMVNQGGNDEDHMGFNIGDDVIQLPSFGEYDNHGTFWSNNVIFP 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15403219 15403878 + MELO3C021692.2.1 Cme12g00862 344079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00862 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Cme12g00862 219 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Cme12g00862 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 52 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 Coils Coil 87 114 - -
Cme12g00862 219 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Cme12g00862 219 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 167 - -
Cme12g00862 219 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Cme12g00862 219 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 167 - -
Cme12g00862 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g00013 Cme-Chr2:188002 Cme12g00862 Cme-Chr12:15403219 3.92E-78 dispersed
Cme04g02313 Cme-Chr4:30071863 Cme12g00862 Cme-Chr12:15403219 5.66E-32 dispersed
Cme12g00862 Cme-Chr12:15403219 Cme11g00042 Cme-Chr11:372198 2.30E-11 dispersed
Cme12g00862 Cme-Chr12:15403219 Cme07g02243 Cme-Chr7:26544560 1.97E-10 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42311 PF00319 SRF-TF 2.20E-17 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00862 - - csv:101219796 397.897