Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00906 TCTCTCTCTCTCTCTATAGCTGTCACTTTCTTTTATGGCGATGTTTCTTCCCACTCTCCACCGATCTCTTCTTCAACTACTGCCCCTACTCCTTCTCCCTTCACCCCTCTCCTTATTCTCCTTCTTCTTTGCTTCTTTCTTGCTTCTGCATGCTCTAACCCCATAGGCAACTGCTTTACACGCCACCCCTCGAATGTTTTTGGTGTTTTAATGGCTTTCCGGCCCTTCTTCTTGCTGTTTTTCTTCTTCATCTTTGGTTCTATTCCATTTGTTCGTACTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATGTACACCTCATTGGACAGTCCTCCTCAGCTCACTGGTTGGACTGTTAGTGGAGGCGATCCATGTGCAGAATCATGGAAAGGGGTGACTTGTGAAGGGTCTGCTGTTGTCTCCATTGAGATTTCTGGGCTAGGGCTGAATGGAACGATGGGTTATGCGCTTTCAAGTTTTTTGTCACTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACGCGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAATTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGATGTTTTCACCAATCTTACTACCCTGGAAACCTTGGACCTCTCTTTCAACAATTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTGTCCAATGTTTCTTCCCTGTTTTTGCAGAACAATGGATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCGCAAGAACTGAAGTCGGTTGAAAATTTCATTTATGATGGAAATACATTTGACAATAGTCCTGCACCTCCTCCACCACCTTTTACCCCACCTCCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTAGTGGTGGCACCCATACGGCGCCAAGTTCTGAGGGCAGCTCATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAGTTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCTTCCAGAAGAGAAAACGAAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTATCGGCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGTGTAAAAAGCGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCAAAGAATGGATCAGTGAAAAGAATAAAGGCCCCTATTACTGCTACTTCTTACACTGTTGCTTCTCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGTATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAGAGCTGAGTTTCCTAACGGGAAGACAATGGCGATTAAGAAAATCGATAATTCAGCACTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCGGTTTCAAATATGTCAAGATTGAGGCATACAAACATTGTCACACTGAACGGTTATTGTGCAGAACATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGACATGGAAGTTTACATGATATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCTCGTGTCCGGGTAGCACTGGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAATATATTGCTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACTGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTTGCCTTGTCAGGAATATACACCGTCAAGAGTGACGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCCAGAGTGAGATCAGAGCAGTCACTTGTTAGATGGGCCACCCCTCAACTTCATGATATTGACGCCTTAGCAAAAATGGTAGATCCTACTTTGAATGGAATGTACCCTGCGAAATCTCTATCGCGCTTTGCGGACATCATTGCTCTCTGTGTTCAGCCCGAGCCCGAATTTCGACCTCCCATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTGAAAAGGCATTCGAGTGATGAGTCGGGATTCAGTTACAAAACACCAGAGCATGATGCAGTTGAGTTGCCATTTTGA 2346 43.99 SLSLSIAVTFFYGDVSSHSPPISSSTTAPTPSPFTPLLILLLLCFFLASACSNPIGNCFTRHPSNVFGVLMAFRPFFLLFFFFIFGSIPFVRTLTDASDVQALQVMYTSLDSPPQLTGWTVSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDAIPYQLPPNLTSLNMAKNSLIGNLPYSFSTMASLNYLNMSHNLLSQVIGDVFTNLTTLETLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNGLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFIYDGNTFDNSPAPPPPPFTPPPPGRSRNSPKHPGSSGGTHTAPSSEGSSSHSNKGLPVLAIVGIVLGAIIFVLIVLVAFAVCFQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKAPITATSYTVASLQTATNSFSQECIVGEGSLGRVYRAEFPNGKTMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGHGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPEHDAVELPF 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15934595 15939925 - MELO3C021727.2.1 Cme12g00906 344123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00906 781 MobiDBLite consensus disorder prediction 310 356 - -
Cme12g00906 781 MobiDBLite consensus disorder prediction 314 333 - -
Cme12g00906 781 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 79 772 - -
Cme12g00906 781 SUPERFAMILY L domain-like 96 302 - -
Cme12g00906 781 CDD STKc_IRAK 479 750 - -
Cme12g00906 781 SUPERFAMILY Protein kinase-like (PK-like) 454 747 IPR011009 -
Cme12g00906 781 ProSiteProfiles Protein kinase domain profile. 473 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00906 781 MobiDBLite consensus disorder prediction 334 356 - -
Cme12g00906 781 Gene3D Ribonuclease Inhibitor 95 322 IPR032675 -
Cme12g00906 781 Gene3D Phosphorylase Kinase; domain 1 434 550 - -
Cme12g00906 781 Pfam Leucine Rich repeat 232 247 IPR001611 GO:0005515
Cme12g00906 781 Pfam Leucine Rich repeat 164 178 IPR001611 GO:0005515
Cme12g00906 781 Pfam Leucine rich repeat N-terminal domain 97 136 IPR013210 -
Cme12g00906 781 Gene3D Transferase(Phosphotransferase) domain 1 552 774 - -
Cme12g00906 781 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8-LIKE ISOFORM X1 79 772 - -
Cme12g00906 781 Pfam Protein tyrosine and serine/threonine kinase 478 747 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01519 Cme-Chr4:21789300 Cme12g00906 Cme-Chr12:15934595 0 dispersed
Cme04g02225 Cme-Chr4:29416553 Cme12g00906 Cme-Chr12:15934595 1.27E-125 dispersed
Cme04g02226 Cme-Chr4:29421447 Cme12g00906 Cme-Chr12:15934595 1.10E-148 dispersed
Cme12g00906 Cme-Chr12:15934595 Cme04g02570 Cme-Chr4:31786326 2.26E-86 dispersed
Cme12g00906 Cme-Chr12:15934595 Cme08g00325 Cme-Chr8:2068138 2.50E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65301 PF07714 PK_Tyr_Ser-Thr 6.00E-44 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00906 - - csv:101216091 1338.55