Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00906 TCTCTCTCTCTCTCTATAGCTGTCACTTTCTTTTATGGCGATGTTTCTTCCCACTCTCCACCGATCTCTTCTTCAACTACTGCCCCTACTCCTTCTCCCTTCACCCCTCTCCTTATTCTCCTTCTTCTTTGCTTCTTTCTTGCTTCTGCATGCTCTAACCCCATAGGCAACTGCTTTACACGCCACCCCTCGAATGTTTTTGGTGTTTTAATGGCTTTCCGGCCCTTCTTCTTGCTGTTTTTCTTCTTCATCTTTGGTTCTATTCCATTTGTTCGTACTCTTACTGATGCTTCTGATGTTCAAGCTTTGCAAGTTATGTACACCTCATTGGACAGTCCTCCTCAGCTCACTGGTTGGACTGTTAGTGGAGGCGATCCATGTGCAGAATCATGGAAAGGGGTGACTTGTGAAGGGTCTGCTGTTGTCTCCATTGAGATTTCTGGGCTAGGGCTGAATGGAACGATGGGTTATGCGCTTTCAAGTTTTTTGTCACTGAAAAAGCTTGATATGAGCGACAACAATATTCATGACGCGATTCCTTACCAATTGCCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAGCTTAATTGGTAATCTTCCTTATTCCTTTTCCACCATGGCTTCTCTCAATTATTTGAATATGAGCCACAATTTGCTATCTCAGGTGATAGGAGATGTTTTCACCAATCTTACTACCCTGGAAACCTTGGACCTCTCTTTCAACAATTTTACTGGGGATCTTCCCAAGTCCTTGGGAACTTTGTCCAATGTTTCTTCCCTGTTTTTGCAGAACAATGGATTGACTGGCTCTCTCAATATTCTTATCGATTTGCCTCTGACCACTCTAAATGTAGCAAATAATAATTTCAGTGGATGGATACCGCAAGAACTGAAGTCGGTTGAAAATTTCATTTATGATGGAAATACATTTGACAATAGTCCTGCACCTCCTCCACCACCTTTTACCCCACCTCCTCCTGGTAGATCTCGTAACAGCCCCAAACATCCTGGGTCTAGTGGTGGCACCCATACGGCGCCAAGTTCTGAGGGCAGCTCATCCCACTCGAACAAAGGCTTGCCAGTTTTGGCTATAGTGGGGATAGTTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTCTGCTTCCAGAAGAGAAAACGAAAGAACATTGGTCTAAGAGCTTCCAGTGGAAGGCTGTCTATCGGCACTAGTGTGAATGCTGAGGTGCAAGAGCATCGTGTAAAAAGCGTTGCTGCTGTTGCCGATATTAAGCCTCTTCCTGCAGAGAAAATGAATCCTGAGAGATTACAAGCAAAGAATGGATCAGTGAAAAGAATAAAGGCCCCTATTACTGCTACTTCTTACACTGTTGCTTCTCTTCAAACTGCAACAAATAGTTTTAGCCAAGAATGTATAGTTGGTGAAGGTTCTCTTGGCCGTGTTTACAGAGCTGAGTTTCCTAACGGGAAGACAATGGCGATTAAGAAAATCGATAATTCAGCACTGTCACTACAGGAAGAAGACAATTTTCTTGAAGCGGTTTCAAATATGTCAAGATTGAGGCATACAAACATTGTCACACTGAACGGTTATTGTGCAGAACATGGTCAGCGTCTTCTAGTTTACGAGTTCATTGGACATGGAAGTTTACATGATATGCTCCATTTTGCTGAAGAAAGTAGTAAGACACTGACTTGGAATGCTCGTGTCCGGGTAGCACTGGGAACTGCTAGAGCTTTAGAATACTTGCATGAGGTTTGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACTGCAAATATATTGCTTGATGAAGATCTCAACCCCCATTTGTCAGATTGTGGTTTGGCTGCTTTAACACCCAACACTGAGCGGCAGATTTCTACTCAGATGGTTGGTTCATTTGGTTATAGTGCTCCAGAATTTGCCTTGTCAGGAATATACACCGTCAAGAGTGACGTGTACAGCTTTGGGGTGGTGATGTTGGAGCTCTTGACTGGCCGAAAGCCACTTGACAGTTCCAGAGTGAGATCAGAGCAGTCACTTGTTAGATGGGCCACCCCTCAACTTCATGATATTGACGCCTTAGCAAAAATGGTAGATCCTACTTTGAATGGAATGTACCCTGCGAAATCTCTATCGCGCTTTGCGGACATCATTGCTCTCTGTGTTCAGCCCGAGCCCGAATTTCGACCTCCCATGTCTGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTGAAAAGGCATTCGAGTGATGAGTCGGGATTCAGTTACAAAACACCAGAGCATGATGCAGTTGAGTTGCCATTTTGA 2346 43.99 SLSLSIAVTFFYGDVSSHSPPISSSTTAPTPSPFTPLLILLLLCFFLASACSNPIGNCFTRHPSNVFGVLMAFRPFFLLFFFFIFGSIPFVRTLTDASDVQALQVMYTSLDSPPQLTGWTVSGGDPCAESWKGVTCEGSAVVSIEISGLGLNGTMGYALSSFLSLKKLDMSDNNIHDAIPYQLPPNLTSLNMAKNSLIGNLPYSFSTMASLNYLNMSHNLLSQVIGDVFTNLTTLETLDLSFNNFTGDLPKSLGTLSNVSSLFLQNNGLTGSLNILIDLPLTTLNVANNNFSGWIPQELKSVENFIYDGNTFDNSPAPPPPPFTPPPPGRSRNSPKHPGSSGGTHTAPSSEGSSSHSNKGLPVLAIVGIVLGAIIFVLIVLVAFAVCFQKRKRKNIGLRASSGRLSIGTSVNAEVQEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKAPITATSYTVASLQTATNSFSQECIVGEGSLGRVYRAEFPNGKTMAIKKIDNSALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCAEHGQRLLVYEFIGHGSLHDMLHFAEESSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEDLNPHLSDCGLAALTPNTERQISTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPEHDAVELPF 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 15934595 15939925 - MELO3C021727.2.1 Cme12g00906 344123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00906 781 MobiDBLite consensus disorder prediction 310 356 - -
Cme12g00906 781 MobiDBLite consensus disorder prediction 314 333 - -
Cme12g00906 781 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 79 772 - -
Cme12g00906 781 SUPERFAMILY L domain-like 96 302 - -
Cme12g00906 781 CDD STKc_IRAK 479 750 - -
Cme12g00906 781 SUPERFAMILY Protein kinase-like (PK-like) 454 747 IPR011009 -
Cme12g00906 781 ProSiteProfiles Protein kinase domain profile. 473 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g00906 781 MobiDBLite consensus disorder prediction 334 356 - -
Cme12g00906 781 Gene3D Ribonuclease Inhibitor 95 322 IPR032675 -
Cme12g00906 781 Gene3D Phosphorylase Kinase; domain 1 434 550 - -
Cme12g00906 781 Pfam Leucine Rich repeat 232 247 IPR001611 GO:0005515
Cme12g00906 781 Pfam Leucine Rich repeat 164 178 IPR001611 GO:0005515
Cme12g00906 781 Pfam Leucine rich repeat N-terminal domain 97 136 IPR013210 -
Cme12g00906 781 Gene3D Transferase(Phosphotransferase) domain 1 552 774 - -
Cme12g00906 781 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8-LIKE ISOFORM X1 79 772 - -
Cme12g00906 781 Pfam Protein tyrosine and serine/threonine kinase 478 747 IPR001245 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00906 - - - csv:101216091 1338.55
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g01519 Cme-Chr4:21789300 Cme12g00906 Cme-Chr12:15934595 0 dispersed
Cme04g02225 Cme-Chr4:29416553 Cme12g00906 Cme-Chr12:15934595 1.27E-125 dispersed
Cme04g02226 Cme-Chr4:29421447 Cme12g00906 Cme-Chr12:15934595 1.10E-148 dispersed
Cme12g00906 Cme-Chr12:15934595 Cme04g02570 Cme-Chr4:31786326 2.26E-86 dispersed
Cme12g00906 Cme-Chr12:15934595 Cme08g00325 Cme-Chr8:2068138 2.50E-163 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme12g00906 . 458 751 Strubbelig Receptor Gene Family AT1G11130 53.7 5.9e-85 312.4
Cme04g02226 . 4 637 Strubbelig Receptor Gene Family AT5G06820 51.7 2.0e-160 563.1
Cme01g00355 . 31 786 Strubbelig Receptor Gene Family AT4G03390 61.7 4.9e-205 711.4
Cme01g02755 . 355 681 Strubbelig Receptor Gene Family AT4G03390 55.1 1.1e-90 331.6
Cme03g00822 . 4 652 Strubbelig Receptor Gene Family AT3G13065 55.0 1.4e-139 493.8
Cme01g02755 . 371 664 Strubbelig Receptor Gene Family AT3G13065 60.5 1.6e-98 357.5
Cme03g00822 . 4 674 Strubbelig Receptor Gene Family AT1G78980 59.7 2.0e-181 632.9
Cme04g01519 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.1 6.9e-150 528.1
Cme04g01519 . 1 719 Strubbelig Receptor Gene Family AT1G53730 58.3 3.7e-207 718.4
Cme01g02755 . 1 691 Strubbelig Receptor Gene Family AT1G53730 59.0 5.1e-172 601.7
Cme03g00822 . 5 660 Strubbelig Receptor Gene Family AT1G53730 51.5 1.1e-150 530.8
Cme12g00906 . 79 759 Strubbelig Receptor Gene Family AT1G53730 50.6 4.6e-149 525.4
Cme04g01519 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.8 2.4e-187 652.5
Cme01g02755 . 6 681 Strubbelig Receptor Gene Family AT3G14350 53.5 1.0e-153 540.8
Cme12g00906 . 208 781 Strubbelig Receptor Gene Family AT4G22130 63.0 3.3e-179 625.2
Cme04g01519 . 398 719 Strubbelig Receptor Gene Family AT4G22130 63.3 1.9e-118 423.3
Cme01g02755 . 368 683 Strubbelig Receptor Gene Family AT4G22130 65.1 8.1e-117 417.9
Cme01g00355 . 454 778 Strubbelig Receptor Gene Family AT4G22130 56.8 2.9e-106 382.9
Cme03g00822 . 355 674 Strubbelig Receptor Gene Family AT4G22130 57.1 1.5e-99 360.5
Cme08g00325 . 367 655 Strubbelig Receptor Gene Family AT4G22130 60.5 1.3e-98 357.5
Cme04g02226 . 299 621 Strubbelig Receptor Gene Family AT4G22130 50.5 4.2e-89 325.9
Cme04g02225 . 334 624 Strubbelig Receptor Gene Family AT4G22130 51.2 1.7e-77 287.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65301 PF07714 PK_Tyr_Ser-Thr 6.00E-44 CL0016 Cme PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g00906 Cme_Chr12 FPKM 2.835042 1.968906 3.195868 2.889793 4.624576 4.020251 5.695646 2.180418 2.427794 2.661978