Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00962 ATGGCCGCAAAAGATGCAGAGGAAGTCTTGGACGTGCAGTCGGTCGTTGAAGCTGTAGTTGCAAATGAAGACGCTGCTGACGTTCCTAGCTACGAAGTAGAAAGCCTCTGCATGCGTTGCGGTGAAAACGGGATAACAAGATTTTTGTTAACTTTAATTCCGCACTTCAGAAAGATTTTGTTGTCAGCCTTTGAATGTCCACATTGTGGTGAGAGGAACAATGAAGTTCAGTTTGCTGGTGAGATCCAGCCACGAGGCTGTTGCTACTGTTTGGAGGTTCATGCAAGCGACCAGAAGATGCTCAATCGACAAGTGGTTAAATCTGAATCTGCCATTATTAAGATCCCAGAATTGGATTTTGAGATTCCAGCAGAGGCTCAACGTGGAACTCTATCAACTGTGGAAGGTATATTGGTACGAGCTGTAGACGGATTGGAAGCCCTTCAAGAGGAACGTAGGAAGGTGGATCCTCAGACTGCTGAAGCAATAGACCATTTTCTTCTGAAACTGAAAGCTTGTGCTAAGGGAGATTCATCTTTCTCCTTCATCTTGGATGATCCAGCTGGAAACAGCTTCATCGAGAACCCATTTGCACCATCCAAAGATCCATCATTAAGTATCAAGTTTTATGAGCGGACTCCAGAACAACAAGCATCGTTGGGATATTATGTTGAACCATCACAACCAGCAGAAGCTCAGGGTGGAGCATCAACAGGTGGAGTTGATGCTTCTAATCAAGTTAGAGGACAGGCACATGGATCTGTAGGAGCACAGGCTGGCCATCGGGCAATAGCTCAAAGTAACAGTGCAGAGATTGCTGAGGCCTTGTTTCGTTACACTGCACCAGAAGAAGTGATGACATTCCCATCAACATGTGGAGCTTGTGCAGTTAGGTGTGAGACTCGAATGTTCGTAACCAAAATTCCATACTTCCAAGAAGTGATTGTCATGGCAACTACCTGTGATGCTTGTGGTTACCGTAGTTCTGAGCTGAAGCCTGGTGGGCGAATCCCTGAAAAAGGAAAGATAATTAGTCTATGTGTGAAGAATGTTAGAGATCTCAGTCGAGATGTAATAAAGTCAGATACTGCAAGTGTAAAAGTTCCAGATCTTGAGTTGGAGCTGACTAGTGGTACTCTTGGGGGAATTGTTACAACTGTTGAAGGCTTAATCACAAAGATAAGTGAAAGTCTTGAGAGAGTACACGGTTTTACTTTTGGAGACAGTCTTGATGAAAATAAAAGAAACAAGTGGTTGGACTTCAAAACAAGACTAACCAAGCTCTTGAGTTTGGAGCAGCCTTGGACTCTAATCCTTGATGATGCCTTAGCAAATTCGTTTATTGCACCAGTGACCGATGATATGAAAGATGACCATCAGTTAACATTTGAGGAGTACGAGCGTTCGTGGGAACAAAACGAGGAACTTGGTTTGAACGACATGGACACCTCGGCTGCTGATGCTGCTTATGAGTGCAACTAA 1482 44.13 MAAKDAEEVLDVQSVVEAVVANEDAADVPSYEVESLCMRCGENGITRFLLTLIPHFRKILLSAFECPHCGERNNEVQFAGEIQPRGCCYCLEVHASDQKMLNRQVVKSESAIIKIPELDFEIPAEAQRGTLSTVEGILVRAVDGLEALQEERRKVDPQTAEAIDHFLLKLKACAKGDSSFSFILDDPAGNSFIENPFAPSKDPSLSIKFYERTPEQQASLGYYVEPSQPAEAQGGASTGGVDASNQVRGQAHGSVGAQAGHRAIAQSNSAEIAEALFRYTAPEEVMTFPSTCGACAVRCETRMFVTKIPYFQEVIVMATTCDACGYRSSELKPGGRIPEKGKIISLCVKNVRDLSRDVIKSDTASVKVPDLELELTSGTLGGIVTTVEGLITKISESLERVHGFTFGDSLDENKRNKWLDFKTRLTKLLSLEQPWTLILDDALANSFIAPVTDDMKDDHQLTFEEYERSWEQNEELGLNDMDTSAADAAYECN 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16724618 16764228 - MELO3C021772.2.1 Cme12g00962 344179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00962 493 Pfam ZPR1 zinc-finger domain 290 448 IPR004457 GO:0008270
Cme12g00962 493 Pfam ZPR1 zinc-finger domain 35 194 IPR004457 GO:0008270
Cme12g00962 493 Gene3D ZPR1, A/B domain 81 222 IPR042451 -
Cme12g00962 493 Gene3D ZPR1, A/B domain 336 478 IPR042451 -
Cme12g00962 493 PANTHER ZINC FINGER PROTEIN ZPR1 3 491 IPR040141 -
Cme12g00962 493 PANTHER ZINC FINGER PROTEIN ZPR1-RELATED 3 491 - -
Cme12g00962 493 Gene3D ZPR1, zinc finger domain 27 80 IPR042452 -
Cme12g00962 493 Gene3D ZPR1, zinc finger domain 280 335 IPR042452 -
Cme12g00962 493 SMART zpr1 35 195 IPR004457 GO:0008270
Cme12g00962 493 SMART zpr1 290 450 IPR004457 GO:0008270
Cme12g00962 493 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 291 482 IPR004457 GO:0008270
Cme12g00962 493 TIGRFAM ZPR1_znf: ZPR1 zinc finger domain 37 219 IPR004457 GO:0008270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00962 K06874 - csv:101208000 948.732