Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00970 ATGGCATCCTTCACTAAACTCATCTCAATCTTCTTGTTTCTCCTCTGTTTTCTCTCAATCCAAGCTGTTTCACAATCTGATGAATGTGAAACCACAGTCAATTCATGTACAAACAAAGGCAAAGCTTTACGTCTTAAAATCATTGCCATTTTCTCGATCCTCATTGCGAGTGTTATCGGTGTTGGCTCGCCACTCGTCACTCGATCCATCCCAATGTTGCACCCGGATAGAAACATGTTTGTCATTCTCAAAGCATTCGCAGCAGGTATCATTCTCGCCACCGGTTTCATGCATGTTTTGCCTGATTCTTTCGATATGCTTTGGTCGAATTGTCTCAAGGAGAATCCATGGCATAAGTTTCCCTTTTCGGGTTTCGTCGCTATGATGTCTGCCATCGTCACCCTCATGGTGGATTCTATGGCTACTAGTTTGTATACCAAGAAACATAACGAAGTTATGCCCGAGAATTCTCCGAGAGGAGGAGATGATCATGAGTCGCCTGTAGTGAGTGGTGGCCATTTCCACGGCCACCATCATATGGATGCTAAAGAAACTAATGCCGGTTCTCAACTCTTGCGTTATCGTGTCGTTGCCATGGTTTTGGAAATGGGAATTGTGGTTCATTCAGTTGTGATTGGACTTTCACTTGGAGCAACAAATGATACTTGCACAATCAAAGGTCTAGTTGCTGCTCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTGGGTGGCTGTATTCTTCAGGCAGAATACAAGTGGATGAAGAAAGCAATAATGGTATTCTTTTTCTCAGTGACAACCCCATTTGGGATAGCACTTGGAATAGGTTTATCAAAAACATACAAAGAAAATAGCCCTATTGCACTCATAACTGTGGGATTGCTAAATGCTTCTTCAGCTGGCCTTCTCATTTACATGGCTTTAGTGGATCTTCTTTCTGCTGATTTTATGGGCCCTAAATTACAAGGCAGCATCAAACTTCAAGTCAAATCCTACATTGCTGTTCTCTTAGGAGCTGGTGCTATGTCTTTAATGGCAAAGTGGGCTTGA 1053 42.64 MASFTKLISIFLFLLCFLSIQAVSQSDECETTVNSCTNKGKALRLKIIAIFSILIASVIGVGSPLVTRSIPMLHPDRNMFVILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPFSGFVAMMSAIVTLMVDSMATSLYTKKHNEVMPENSPRGGDDHESPVVSGGHFHGHHHMDAKETNAGSQLLRYRVVAMVLEMGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKKAIMVFFFSVTTPFGIALGIGLSKTYKENSPIALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQGSIKLQVKSYIAVLLGAGAMSLMAKWA 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16943369 16946165 + MELO3C021780.2.1 Cme12g00970 344187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00970 350 Pfam ZIP Zinc transporter 44 347 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cme12g00970 350 PANTHER ZINC/IRON TRANSPORTER 11 350 - -
Cme12g00970 350 PANTHER ZINC TRANSPORTER 10-RELATED 11 350 - -
Cme12g00970 350 TIGRFAM zip: ZIP zinc/iron transport family 32 350 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02159 Cme-Chr3:28711190 Cme12g00970 Cme-Chr12:16943369 5.86E-87 dispersed
Cme07g00660 Cme-Chr7:5576576 Cme12g00970 Cme-Chr12:16943369 1.60E-112 dispersed
Cme08g00286 Cme-Chr8:1831541 Cme12g00970 Cme-Chr12:16943369 2.64E-136 dispersed
Cme11g01416 Cme-Chr11:21002630 Cme12g00970 Cme-Chr12:16943369 1.74E-76 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00970 K14709 - csv:101221552 659.062