Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g00980 ATGAAGACTGAAAATGGGAGGAAACAAGGGGGAGGAGCAGCCCCATGCGCAGCATGCAAGCTTCTTAGAAGAAGGTGCGGGGAAGAATGTGTATTTGCTCCATACTTTCCTGCTGACCAACCTCATAAGTTCGCCAACGTTCATAAGGTTTTCGGCGCTAGCAATGTTAACAAAATGCTTCAGGAGTTGCCAATTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCCCGAGTGCGTGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCGAGGCTCGTGGGCTCACACTCTAGGGCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATAGAGGACTCAATGTGGTGA 513 50.88 MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 17143350 17146727 + MELO3C021789.2.1 Cme12g00980 344197
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme12g00980 170 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cme12g00980 170 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cme12g00980 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 3 5 156 - -
Cme12g00980 170 Coils Coil 94 121 - -
Cme12g00980 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 156 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g02160 Cme-Chr3:28717470 Cme12g00980 Cme-Chr12:17143350 5.02E-25 dispersed
Cme10g01224 Cme-Chr10:12573051 Cme12g00980 Cme-Chr12:17143350 1.10E-49 dispersed
Cme11g01593 Cme-Chr11:23718948 Cme12g00980 Cme-Chr12:17143350 9.41E-35 dispersed
Cme11g01594 Cme-Chr11:23720916 Cme12g00980 Cme-Chr12:17143350 2.29E-27 dispersed
Cme11g01727 Cme-Chr11:25352249 Cme12g00980 Cme-Chr12:17143350 1.33E-54 dispersed
Cme12g00332 Cme-Chr12:4561282 Cme12g00980 Cme-Chr12:17143350 1.22E-45 dispersed
Cme12g00335 Cme-Chr12:4617591 Cme12g00980 Cme-Chr12:17143350 6.15E-48 dispersed
Cme12g00980 Cme-Chr12:17143350 Cme01g01534 Cme-Chr1:20301579 4.65E-54 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42313 PF03195 LOB 2.60E-43 No_clan Cme TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g00980 - - csv:101202930 302.367