Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g00980 | ATGAAGACTGAAAATGGGAGGAAACAAGGGGGAGGAGCAGCCCCATGCGCAGCATGCAAGCTTCTTAGAAGAAGGTGCGGGGAAGAATGTGTATTTGCTCCATACTTTCCTGCTGACCAACCTCATAAGTTCGCCAACGTTCATAAGGTTTTCGGCGCTAGCAATGTTAACAAAATGCTTCAGGAGTTGCCAATTCACCAACGGGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCCCGAGTGCGTGACCCGGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGACGCCCTCCAAACTCAGCTGGCTTTGGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCGAGGCTCGTGGGCTCACACTCTAGGGCCATGTTTGAGATGGATATGGTTGTGGACCAAGCCATAGAGGACTCAATGTGGTGA | 513 | 50.88 | MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW | 170 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 17143350 | 17146727 | + | MELO3C021789.2.1 | Cme12g00980 | 344197 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g00980 | 170 | Pfam | Lateral organ boundaries (LOB) domain | 15 | 112 | IPR004883 | - | |
| Cme12g00980 | 170 | ProSiteProfiles | LOB domain profile. | 14 | 115 | IPR004883 | - | |
| Cme12g00980 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 3 | 5 | 156 | - | - | |
| Cme12g00980 | 170 | Coils | Coil | 94 | 121 | - | - | |
| Cme12g00980 | 170 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 5 | 156 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme03g02160 | Cme-Chr3:28717470 | Cme12g00980 | Cme-Chr12:17143350 | 5.02E-25 | dispersed | |
| Cme10g01224 | Cme-Chr10:12573051 | Cme12g00980 | Cme-Chr12:17143350 | 1.10E-49 | dispersed | |
| Cme11g01593 | Cme-Chr11:23718948 | Cme12g00980 | Cme-Chr12:17143350 | 9.41E-35 | dispersed | |
| Cme11g01594 | Cme-Chr11:23720916 | Cme12g00980 | Cme-Chr12:17143350 | 2.29E-27 | dispersed | |
| Cme11g01727 | Cme-Chr11:25352249 | Cme12g00980 | Cme-Chr12:17143350 | 1.33E-54 | dispersed | |
| Cme12g00332 | Cme-Chr12:4561282 | Cme12g00980 | Cme-Chr12:17143350 | 1.22E-45 | dispersed | |
| Cme12g00335 | Cme-Chr12:4617591 | Cme12g00980 | Cme-Chr12:17143350 | 6.15E-48 | dispersed | |
| Cme12g00980 | Cme-Chr12:17143350 | Cme01g01534 | Cme-Chr1:20301579 | 4.65E-54 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 42313 | PF03195 | LOB | 2.60E-43 | No_clan | Cme | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g00980 | - | - | csv:101202930 | 302.367 |