Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01007 ATGTTGCAGATTTCAGCTAGATGGGACCCAGATGAAGCATGCAGGCCTTTAGTTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATACGTCCTCAAGCTGAATCTTATGGTATATGTCGGATTGTCCCTCCATCTTCCTGGAATCCACCATGCGTTCTCAAGGAGAAATCTAAGTGGGAACATGCCACGTTTTCCACTCGAATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAGAAAGAAAAGTAGAGGCCGAAAACGCAAGCGAAGGAGACAATCAAAAGCGGCGACATCAGCTAGAAGCACCAATCTTGGTGTAGAAGCAACTGTTACTTTTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGACTTCACACTTAAAGATTTCCAGGCATATGCAGACCATTTTAGGGAATGTTATTTTGGAATTAAGAAGGCTCGAGAAGATATAAATTCTAATATTGAATCTAGCAAGAGATGGGAACCTTCTGTGGAGGATATAGAGGGTGAATATTGGCGGATAGTTGAAAAATCTAATGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTTGCAGTGGCTTTCCCAAAGCCTCATCCCAGGTAACTGAAGGAAATCTGGATCCGTATGTGAAGTCAGGTTGGAATCTTAACAACTTCCCTCGCTTGCAAGGTTCTGTTCTGTGCTTTGAGGAAAGTGATATATCTGGAGTACTAGTGCCATGGCTATATGTTGGAATGTGCTTTTCCTCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTGAACTATATGCACTGGGGAGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCCATGCATCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGCAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTACTTAAATCTGAAGGAGTGCCTGTATATCGAGTGGTCCAAAATTCCAGGGAGTTCGTTCTTACCTTCCCAAGGGCATATCATGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTGGTTCATGGGCAAAATGCTGTAGAACTTTATAGTGCACAACGACATAGGACATCACTTTCACATGATAAACTATTATTTGGTTCAGCCCGGGAAGCTACCGAGGCCCTTTGGGAGATACTAGTCCTAGAAAAGAAAACTCCAAATAATCTTAATTGGAAAAGTGTCTGTGGAATAGATGGAGATCTTACAAAAGTGATCAAGACAAGAGTGAAGATGGAGGAGGAAAGAATGAATTGCCTCCCAACTAATATGAAGTTGCAAAAGATGGAAAGTGAGATTGATTGCAAAAGTGAAAGAGAGTGTTATGCCTGCTTCTATGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCTGATCGGTTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCAAGTAGATGACAGGTGTGTGCTCTTTCGCTACAGTATAAATGAGTTGCACACACTTGTCAAAGCATTGGAAGGGGGATTAGATGCTATTAAAGAATGGGCCTCAAGATACTGTAAAATGGTAAAGGACAATGAATCTGTAGCCAAGGTGGAGTTGGACAGCAGACTAATTGAAAAACCATCTTGGTCCCCACAAATAACAGATAAGCTAAAAAGATCAGATGTCCCCTGCAGTTCGTCTAGCCATGCTTCTTCAGAAGTAGTGCAGTCAGAATCTCACCGTGGGTCACTTAGCCTTAATAATTCCAACCTTAGTTCAGATAGTCAGAATGACATTGTAAATAGTGAAGTTATGTTAATAAATAAAGGCAAGAAGGTGGAGCAGGAGTGTTGCATTGACTTGAACGTTGACATAATTTCTGAAGGGAATGCTAACTGTGCGCCCCACAAATTCGATACCAAGACAATCGTTGATTTGGAGGAAATTTACCCTTCGGTGTATGAAGAAAAATACATTTGTAAAGCAGCACATGAATCAGAGTTGATGGATCTGGACACTGATCATGTAACCACTCTTCCAGTTCATGATTACTCTTCAAGTGTAAAAGATGGTGTGAGAATATGTGGATCTAATGCCAGTAAGTTGTTTGGAGTTGATCTTTCACAGTCGCAGTCAGCATTTCCATACAACAATTACTCAAAAGTAGAAACTTCAAAACATTTGGATAAAAGGATACCTTCTTGGTCAAGTTCTCATTTGAAAAGGTTTCCTTTTGTTGAACCTTTAAATATTGGAACCATTATGTTTGGAAAGCCTTGGCACTGCGACAAGGCCATATTTCCAAAAGGTTTTAGAAGTCGAGTTAAATTCTTGAGTGTGCTAAATCCAACCAGTATTGTTACCTACACATCAGAAGTTCTTGACGCTGGACTCCTGGGACCTCTGTTCAAGGTTACCTTGGAAGAATCTCCTGGTGAGAACTTCACTGACGTCTCAGCAACCAAATGCTGGGACATGGTTGTACAAAGAATAAACAGAGAAATCAAAAGACATAACCTTAGATTGGGAGGCACACTTCCTGGGCAGCTTTTGAAGGAAATTGATGGGCTTGAAATGTTTGGATTTCTTTCACCTCATGTTATTCAGGCTATCGAGGCTCTTGATCCTAAACACCAGTGTACGGAGTACTGGAACCACCAGGAGCAGCAGGCAATACCCGCAAATTCAGGTGACAACACTTTCCGTGAAAGTTCTGCTTTAGGATTGAATTTCTGTTGGGGCGAAACAAGTGCAACTACTTTTGATATCAATAGGGAAGAGGATGAAACTGTCACTCCAACTATAGGAATGGAAAGGCATCATCAAAATGAAGTACAAGTTCGGTCAGTGTTAAAGGGGCTGTTAAACAAAGCAAATCCTGAAGAATTGAGCGTGCTGCAGACCATATTCTGCACAGATTCGCAAACCACTGAATTGAGAGCAGAATTTGCATCACTGATCAAAGAGAAACAAGATAAGTGTAGATAG 3081 40.99 MLQISARWDPDEACRPLVDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKSKWEHATFSTRIQQVDLLQNREPMRKKSRGRKRKRRRQSKAATSARSTNLGVEATVTFESDEKFGFNSGSDFTLKDFQAYADHFRECYFGIKKAREDINSNIESSKRWEPSVEDIEGEYWRIVEKSNDEVEVYYGADIESATFCSGFPKASSQVTEGNLDPYVKSGWNLNNFPRLQGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHASSLEAAMKKHLPDLFAEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSAQRHRTSLSHDKLLFGSAREATEALWEILVLEKKTPNNLNWKSVCGIDGDLTKVIKTRVKMEEERMNCLPTNMKLQKMESEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCQVDDRCVLFRYSINELHTLVKALEGGLDAIKEWASRYCKMVKDNESVAKVELDSRLIEKPSWSPQITDKLKRSDVPCSSSSHASSEVVQSESHRGSLSLNNSNLSSDSQNDIVNSEVMLINKGKKVEQECCIDLNVDIISEGNANCAPHKFDTKTIVDLEEIYPSVYEEKYICKAAHESELMDLDTDHVTTLPVHDYSSSVKDGVRICGSNASKLFGVDLSQSQSAFPYNNYSKVETSKHLDKRIPSWSSSHLKRFPFVEPLNIGTIMFGKPWHCDKAIFPKGFRSRVKFLSVLNPTSIVTYTSEVLDAGLLGPLFKVTLEESPGENFTDVSATKCWDMVVQRINREIKRHNLRLGGTLPGQLLKEIDGLEMFGFLSPHVIQAIEALDPKHQCTEYWNHQEQQAIPANSGDNTFRESSALGLNFCWGETSATTFDINREEDETVTPTIGMERHHQNEVQVRSVLKGLLNKANPEELSVLQTIFCTDSQTTELRAEFASLIKEKQDKCR 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17605207 17610969 + MELO3C021809.2.1 Cme12g01007 344224

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01007 1026 Pfam JmjC domain, hydroxylase 262 378 IPR003347 -
Cme12g01007 1026 SMART cupin_9 229 395 IPR003347 -
Cme12g01007 1026 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Cme12g01007 1026 Pfam F/Y-rich N-terminus 780 824 IPR003888 GO:0005634
Cme12g01007 1026 ProSiteProfiles FYR domain FYRN motif profile. 769 827 IPR003888 GO:0005634
Cme12g01007 1026 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Cme12g01007 1026 SMART JmjN_1 20 61 IPR003349 -
Cme12g01007 1026 SMART fyrc_3 833 924 IPR003889 GO:0005634
Cme12g01007 1026 MobiDBLite consensus disorder prediction 87 115 - -
Cme12g01007 1026 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 3 1023 - -
Cme12g01007 1026 Pfam jmjN domain 22 55 IPR003349 -
Cme12g01007 1026 Pfam F/Y rich C-terminus 831 916 IPR003889 GO:0005634
Cme12g01007 1026 MobiDBLite consensus disorder prediction 587 624 - -
Cme12g01007 1026 SUPERFAMILY Clavaminate synthase-like 195 423 - -
Cme12g01007 1026 Gene3D Cupin 6 379 - -
Cme12g01007 1026 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 1023 - -
Cme12g01007 1026 SMART fyrn_3 783 827 IPR003888 GO:0005634
Cme12g01007 1026 ProSiteProfiles JmjC domain profile. 229 395 IPR003347 -
Cme12g01007 1026 ProSiteProfiles FYR domain FYRC motif profile. 829 919 IPR003889 GO:0005634
Cme12g01007 1026 Gene3D - 777 912 - -
Cme12g01007 1026 MobiDBLite consensus disorder prediction 93 109 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01007 - - - csv:101214856 1951.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01133 Cme-Chr5:18102112 Cme12g01007 Cme-Chr12:17605207 4.61E-42 dispersed
Cme09g01757 Cme-Chr9:22043311 Cme12g01007 Cme-Chr12:17605207 2.10E-14 dispersed
Cme12g01007 Cme-Chr12:17605207 Cme12g01627 Cme-Chr12:23427548 7.66E-49 dispersed
Cme12g01007 Cme-Chr12:17605207 Cme06g02447 Cme-Chr6:31516896 1.26E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g644 . . . . . . . Bma01g01602 Cmo13g00490 . . . . . . Cpe09g00704 . . . . . . . . . . . . . . . . . . . . . Chy12g00459 . . . Bda01g00098 . Bpe02g01049 . . . . . . Cma13g00454 . Car13g00351 . . Cpe20g00587 Bhi08g00940 Tan05g2762 . . . . . . . . . . . . Lsi02g01004 Csa01g02670 . Cme12g01007
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme05g01133 . 1 1233 JUMONJI Transcription Factor Family AT1G08620 54.9 0.0e+00 1260.0
Cme12g01007 . 3 920 JUMONJI Transcription Factor Family AT1G30810 50.2 6.5e-240 827.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42316 PF02373 JmjC 4.20E-45 CL0029 Cme TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g01007 Cme_Chr12 FPKM 0.368647 0.428447 0.359145 0.249793 0.0 0.0 0.0 1.642231 0.925312 0.810374