Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01007 ATGTTGCAGATTTCAGCTAGATGGGACCCAGATGAAGCATGCAGGCCTTTAGTTGATGAAGCACCTGTATTTTATCCTACTGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATACGTCCTCAAGCTGAATCTTATGGTATATGTCGGATTGTCCCTCCATCTTCCTGGAATCCACCATGCGTTCTCAAGGAGAAATCTAAGTGGGAACATGCCACGTTTTCCACTCGAATTCAGCAAGTTGATTTGCTACAAAATAGGGAGCCCATGAGAAAGAAAAGTAGAGGCCGAAAACGCAAGCGAAGGAGACAATCAAAAGCGGCGACATCAGCTAGAAGCACCAATCTTGGTGTAGAAGCAACTGTTACTTTTGAGTCTGATGAAAAATTTGGATTCAATTCTGGGTCAGACTTCACACTTAAAGATTTCCAGGCATATGCAGACCATTTTAGGGAATGTTATTTTGGAATTAAGAAGGCTCGAGAAGATATAAATTCTAATATTGAATCTAGCAAGAGATGGGAACCTTCTGTGGAGGATATAGAGGGTGAATATTGGCGGATAGTTGAAAAATCTAATGATGAGGTTGAGGTTTACTATGGAGCTGATATAGAATCAGCAACATTTTGCAGTGGCTTTCCCAAAGCCTCATCCCAGGTAACTGAAGGAAATCTGGATCCGTATGTGAAGTCAGGTTGGAATCTTAACAACTTCCCTCGCTTGCAAGGTTCTGTTCTGTGCTTTGAGGAAAGTGATATATCTGGAGTACTAGTGCCATGGCTATATGTTGGAATGTGCTTTTCCTCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTGAACTATATGCACTGGGGAGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCCATGCATCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGATTTGTTTGCAGAACAGCCAGATTTACTTCATGAATTGGTCACTCAATTATCTCCTTCAGTACTTAAATCTGAAGGAGTGCCTGTATATCGAGTGGTCCAAAATTCCAGGGAGTTCGTTCTTACCTTCCCAAGGGCATATCATGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAATGTGGCACCGGTTGACTGGTTGGTTCATGGGCAAAATGCTGTAGAACTTTATAGTGCACAACGACATAGGACATCACTTTCACATGATAAACTATTATTTGGTTCAGCCCGGGAAGCTACCGAGGCCCTTTGGGAGATACTAGTCCTAGAAAAGAAAACTCCAAATAATCTTAATTGGAAAAGTGTCTGTGGAATAGATGGAGATCTTACAAAAGTGATCAAGACAAGAGTGAAGATGGAGGAGGAAAGAATGAATTGCCTCCCAACTAATATGAAGTTGCAAAAGATGGAAAGTGAGATTGATTGCAAAAGTGAAAGAGAGTGTTATGCCTGCTTCTATGACTTATATCTCTCTTCAACCTCGTGCAAGTGTTCCCCTGATCGGTTCTCATGCCTTAAGCATGCTAGTAACTTTTGCTCGTGTCAAGTAGATGACAGGTGTGTGCTCTTTCGCTACAGTATAAATGAGTTGCACACACTTGTCAAAGCATTGGAAGGGGGATTAGATGCTATTAAAGAATGGGCCTCAAGATACTGTAAAATGGTAAAGGACAATGAATCTGTAGCCAAGGTGGAGTTGGACAGCAGACTAATTGAAAAACCATCTTGGTCCCCACAAATAACAGATAAGCTAAAAAGATCAGATGTCCCCTGCAGTTCGTCTAGCCATGCTTCTTCAGAAGTAGTGCAGTCAGAATCTCACCGTGGGTCACTTAGCCTTAATAATTCCAACCTTAGTTCAGATAGTCAGAATGACATTGTAAATAGTGAAGTTATGTTAATAAATAAAGGCAAGAAGGTGGAGCAGGAGTGTTGCATTGACTTGAACGTTGACATAATTTCTGAAGGGAATGCTAACTGTGCGCCCCACAAATTCGATACCAAGACAATCGTTGATTTGGAGGAAATTTACCCTTCGGTGTATGAAGAAAAATACATTTGTAAAGCAGCACATGAATCAGAGTTGATGGATCTGGACACTGATCATGTAACCACTCTTCCAGTTCATGATTACTCTTCAAGTGTAAAAGATGGTGTGAGAATATGTGGATCTAATGCCAGTAAGTTGTTTGGAGTTGATCTTTCACAGTCGCAGTCAGCATTTCCATACAACAATTACTCAAAAGTAGAAACTTCAAAACATTTGGATAAAAGGATACCTTCTTGGTCAAGTTCTCATTTGAAAAGGTTTCCTTTTGTTGAACCTTTAAATATTGGAACCATTATGTTTGGAAAGCCTTGGCACTGCGACAAGGCCATATTTCCAAAAGGTTTTAGAAGTCGAGTTAAATTCTTGAGTGTGCTAAATCCAACCAGTATTGTTACCTACACATCAGAAGTTCTTGACGCTGGACTCCTGGGACCTCTGTTCAAGGTTACCTTGGAAGAATCTCCTGGTGAGAACTTCACTGACGTCTCAGCAACCAAATGCTGGGACATGGTTGTACAAAGAATAAACAGAGAAATCAAAAGACATAACCTTAGATTGGGAGGCACACTTCCTGGGCAGCTTTTGAAGGAAATTGATGGGCTTGAAATGTTTGGATTTCTTTCACCTCATGTTATTCAGGCTATCGAGGCTCTTGATCCTAAACACCAGTGTACGGAGTACTGGAACCACCAGGAGCAGCAGGCAATACCCGCAAATTCAGGTGACAACACTTTCCGTGAAAGTTCTGCTTTAGGATTGAATTTCTGTTGGGGCGAAACAAGTGCAACTACTTTTGATATCAATAGGGAAGAGGATGAAACTGTCACTCCAACTATAGGAATGGAAAGGCATCATCAAAATGAAGTACAAGTTCGGTCAGTGTTAAAGGGGCTGTTAAACAAAGCAAATCCTGAAGAATTGAGCGTGCTGCAGACCATATTCTGCACAGATTCGCAAACCACTGAATTGAGAGCAGAATTTGCATCACTGATCAAAGAGAAACAAGATAAGTGTAGATAG 3081 40.99 MLQISARWDPDEACRPLVDEAPVFYPTVEEFEDTLGYIAKIRPQAESYGICRIVPPSSWNPPCVLKEKSKWEHATFSTRIQQVDLLQNREPMRKKSRGRKRKRRRQSKAATSARSTNLGVEATVTFESDEKFGFNSGSDFTLKDFQAYADHFRECYFGIKKAREDINSNIESSKRWEPSVEDIEGEYWRIVEKSNDEVEVYYGADIESATFCSGFPKASSQVTEGNLDPYVKSGWNLNNFPRLQGSVLCFEESDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSHASSLEAAMKKHLPDLFAEQPDLLHELVTQLSPSVLKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLVHGQNAVELYSAQRHRTSLSHDKLLFGSAREATEALWEILVLEKKTPNNLNWKSVCGIDGDLTKVIKTRVKMEEERMNCLPTNMKLQKMESEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCQVDDRCVLFRYSINELHTLVKALEGGLDAIKEWASRYCKMVKDNESVAKVELDSRLIEKPSWSPQITDKLKRSDVPCSSSSHASSEVVQSESHRGSLSLNNSNLSSDSQNDIVNSEVMLINKGKKVEQECCIDLNVDIISEGNANCAPHKFDTKTIVDLEEIYPSVYEEKYICKAAHESELMDLDTDHVTTLPVHDYSSSVKDGVRICGSNASKLFGVDLSQSQSAFPYNNYSKVETSKHLDKRIPSWSSSHLKRFPFVEPLNIGTIMFGKPWHCDKAIFPKGFRSRVKFLSVLNPTSIVTYTSEVLDAGLLGPLFKVTLEESPGENFTDVSATKCWDMVVQRINREIKRHNLRLGGTLPGQLLKEIDGLEMFGFLSPHVIQAIEALDPKHQCTEYWNHQEQQAIPANSGDNTFRESSALGLNFCWGETSATTFDINREEDETVTPTIGMERHHQNEVQVRSVLKGLLNKANPEELSVLQTIFCTDSQTTELRAEFASLIKEKQDKCR 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 17605207 17610969 + MELO3C021809.2.1 Cme12g01007 344224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01007 1026 Pfam JmjC domain, hydroxylase 262 378 IPR003347 -
Cme12g01007 1026 SMART cupin_9 229 395 IPR003347 -
Cme12g01007 1026 Pfam C5HC2 zinc finger 485 536 IPR004198 -
Cme12g01007 1026 Pfam F/Y-rich N-terminus 780 824 IPR003888 GO:0005634
Cme12g01007 1026 ProSiteProfiles FYR domain FYRN motif profile. 769 827 IPR003888 GO:0005634
Cme12g01007 1026 ProSiteProfiles JmjN domain profile. 21 62 IPR003349 -
Cme12g01007 1026 SMART JmjN_1 20 61 IPR003349 -
Cme12g01007 1026 SMART fyrc_3 833 924 IPR003889 GO:0005634
Cme12g01007 1026 MobiDBLite consensus disorder prediction 87 115 - -
Cme12g01007 1026 PANTHER DEMETHYLASE JMJ14-LIKE PROTEIN, PUTATIVE-RELATED 3 1023 - -
Cme12g01007 1026 Pfam jmjN domain 22 55 IPR003349 -
Cme12g01007 1026 Pfam F/Y rich C-terminus 831 916 IPR003889 GO:0005634
Cme12g01007 1026 MobiDBLite consensus disorder prediction 587 624 - -
Cme12g01007 1026 SUPERFAMILY Clavaminate synthase-like 195 423 - -
Cme12g01007 1026 Gene3D Cupin 6 379 - -
Cme12g01007 1026 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 1023 - -
Cme12g01007 1026 SMART fyrn_3 783 827 IPR003888 GO:0005634
Cme12g01007 1026 ProSiteProfiles JmjC domain profile. 229 395 IPR003347 -
Cme12g01007 1026 ProSiteProfiles FYR domain FYRC motif profile. 829 919 IPR003889 GO:0005634
Cme12g01007 1026 Gene3D - 777 912 - -
Cme12g01007 1026 MobiDBLite consensus disorder prediction 93 109 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g01133 Cme-Chr5:18102112 Cme12g01007 Cme-Chr12:17605207 4.61E-42 dispersed
Cme09g01757 Cme-Chr9:22043311 Cme12g01007 Cme-Chr12:17605207 2.10E-14 dispersed
Cme12g01007 Cme-Chr12:17605207 Cme12g01627 Cme-Chr12:23427548 7.66E-49 dispersed
Cme12g01007 Cme-Chr12:17605207 Cme06g02447 Cme-Chr6:31516896 1.26E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42316 PF02373 JmjC 4.20E-45 CL0029 Cme TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01007 - - csv:101214856 1951.41