Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01081 ATGGCGTCTTTTGTGAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCGAAAAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTGATTCAATATCGTATTGTTTGCCAGCAAGTCAATGTTACTTCCTTGGAGGAAGTAATCAAGCACTTCATGCATCTTTCAACTGAGAAGGCAGAGCAGGCTCGTACTCAAGCTCAAGCTTTAGAAGAAGCTTTGGATGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTTAGTGGTGAAAAGGGAAAAGATAGATCTGATCGGGAACTTGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACGGTTCTTGATATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCTCATCGTGCCTTCCAGTTCTGTAAAGTGTATAAAAGAACAACTGAATTTCGTAGGTTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAATAAGTATAGAGACCAAAGGGATCGGCCTGACCTTTCTGCTCCAGAGAGCTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCCGTGGAAGATATTCATGGATTGATGTGCATGGTGAAGAAAACACCCAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTCTGGATATCAGATAGCAATCTTTATCATGCTTATGCATGGCTTAAACTTTTCTCCCTCCAGAAGAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGTTGATAGCTTCTTCTGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTACGACTCTAAGCATGGTGCTTCTCATTTAGAACTTGAACACGAGAAAGAGCGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGTTTAGATTCCAAACTTGAAAGTAGAGATGTGGTGTCTAAAGGAGTCCTAAGCTGTGCAACTCAAGAAGTTAAAGATCTTTATCATCTTTTGGAGCACGAATCCTTCCATCTTGACCTTGCAACAAAACTGCAACCCTTACTAAACAAAGTATCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTCCAATTGTCCCAATATGTTCCTGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTACCAGACTATGAAAATCGAGAGTCTGTCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAGAATTTCATTGGCATGAAAATTGATCATTCGAGGAACATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGGGACCATCTGACTGTTCTCGCAGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCTGTTTTGAAGGCATCAAAAACAGGTGATCTATTGCCTGATTTAGCAGATATTGTCGATAAGGAGCACAAGAGGCTGCTTGCTCGTAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAACGGCAACTTCTTGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACAGAAGATAACAGAAGAGGCAGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGAAAAAACCAACGGCTTCGTAGGGAAATGGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTCGACTCTGAAAAGTTGACAAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAGTTACAAAAGCTAGCGAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAGGCTGCAACGTTAATTGAAGCTGCATTTCAGCAACGGTTGCTTGAAGAGAGAATGATTCATGAACGTGATCAGCAGATACGGAGGTTTCTCTCATGGGTTACTTTAAATGTTTCTGACATTGAACCGCTGGAGGTAGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTTAAGGAGAAGAATCGATTGTCTAGAATGTTGGAGAGTAAGAAAATTTTCCAAGAAAGAGTAATTAGTCTTCGTCAAGAGGAATTCAGCAGACGTAGAGCTGAAAGAGAAGAGCATATCAAGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGAAAGAAAATATTTTACGTAAGGCGTGAAGAGGAAAGGATTAGAATATTGCGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCGGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATAGCTGAGAAGCAGAGACAGAGAGAGCGAGAGTTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTAGTAGTGCCAGGTCTGGTGATGCTCCTGCCCGACCTGATGTTGCTCCTAGTTCTCGGCCTCTGGACCCTGGGACTGCTGCTCCTGCTGCCGCTGCAGCTGCTGCAACATCCCCAGCAAAATACGTGCCGAAGTTTCGACGGAATGAAGGCTCCACTCCTGACGCACCACCATCTGAATCTGGTCGATGGGGAAGCAGCCGGCCTGATAGACCATCTCGACCAGACAGTTGGCGTAATGATGACAGCAGATCTGCGTTTGGAAGTTCAAGGCCATCATGGTCCTCATCCCGAGCTCCTGCTCGTGCTAGCACCGACCGCTGA 2928 43.41 MASFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARTQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLDILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVVSKGVLSCATQEVKDLYHLLEHESFHLDLATKLQPLLNKVSKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIGMKIDHSRNIVLFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVLKASKTGDLLPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLQKITEEAEQKRLAAEYEQRKNQRLRREMEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQIRRFLSWVTLNVSDIEPLEVELSKQRHEGDLKEKNRLSRMLESKKIFQERVISLRQEEFSRRRAEREEHIKQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGSSARSGDAPARPDVAPSSRPLDPGTAAPAAAAAAATSPAKYVPKFRRNEGSTPDAPPSESGRWGSSRPDRPSRPDSWRNDDSRSAFGSSRPSWSSSRAPARASTDR 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18741690 18749773 + MELO3C035497.2.1 Cme12g01081 344298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01081 975 Coils Coil 781 801 - -
Cme12g01081 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 919 - -
Cme12g01081 975 MobiDBLite consensus disorder prediction 821 867 - -
Cme12g01081 975 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 431 522 - -
Cme12g01081 975 Coils Coil 551 585 - -
Cme12g01081 975 Gene3D - 366 483 - -
Cme12g01081 975 Gene3D - 269 343 - -
Cme12g01081 975 MobiDBLite consensus disorder prediction 935 949 - -
Cme12g01081 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 919 IPR027512 GO:0005852
Cme12g01081 975 Coils Coil 659 689 - -
Cme12g01081 975 Coils Coil 806 865 - -
Cme12g01081 975 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 950 IPR027512 GO:0005852
Cme12g01081 975 MobiDBLite consensus disorder prediction 950 975 - -
Cme12g01081 975 Pfam PCI domain 370 499 IPR000717 -
Cme12g01081 975 Gene3D UVR domain 217 268 - -
Cme12g01081 975 Coils Coil 593 639 - -
Cme12g01081 975 ProSiteProfiles PCI domain profile. 316 503 IPR000717 -
Cme12g01081 975 Coils Coil 93 120 - -
Cme12g01081 975 MobiDBLite consensus disorder prediction 821 975 - -
Cme12g01081 975 SMART PINT_4 431 522 IPR000717 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g01081 Cme-Chr12:18741690 Cme12g01088 Cme-Chr12:18792706 0 dispersed
Cme12g01081 Cme-Chr12:18741690 Cme12g01085 Cme-Chr12:18758450 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01081 K03254 - csv:101209344 1513.82