Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01085 ATGACATCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCTTTGCAAGCTCTTCATGATCTTATTACTTCAAAGAGATATCGAGCATGGCAGAAACCTCTTGAGAAGATTATGTTCAAGTATGTTGAACTCTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGTCAGCAAGTCAATGTTACTTCTCTAGAGGAAGTAATCAAGCACTTTATGCATCTTTCTACTGAGAAGGCAGAGCAGGCTCGTACTCAAGCTCAAGCCTTAGAAGAAGCCCTGGATGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGCGGTGAAAAGGGAAAAGATAGATCTGATCGTGAACTTGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTACTTGAAATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATTAGAAATCATCTTGCTAATCTCAACAAGTTTAGAGACCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTTGACACGAGAATTGAACAGCTGAAGGTTGCCACAGAGCTGGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAGGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTTTGGAAATCGGATAGCAATCTTTATCATGCTTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTTATAGCTTCATCAGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCAAAGCATAGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGAGGAATTTGAGGATAGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCTGAACTGGTGTCAAAAGGAGTCCTGAGCTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTATTTTCTCTTGATCTTGCAATAAAGTTGCAACCCTTACTTGACAAAATATCGAAGCTTGGAGGTAAGCTTTCATCCGCTTCATCTGTCCCCGAAGTGCAATTATCCAAATATGTCCCGGCTCTTGAAAAGCTTGCTACCCTGAGACTGCTTCAGCAGGGTATCGAATCAGATGAGCTTCGAGACCACCTGACTGTTCTTGCTGAATCCCTTAACAAAGCAAGAGCTATGATCTATCCTCCAGTTAGGAAATCCTCAAAAATAGGTGATATATTGCCTGATTTGGCCGATATTGTTGATAAAGAACACAGGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCCGAGCAAAAGCGGCTTGCTGCAGAATACGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAACGAGAACTTGAAGAAGCACAGGCTCTACTTCAAGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAAGAAACCGGTTCTTGACTCTGAAAAATTGTCGAAACAAGCTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTAGCTAAAACTATGGACTATCTAGAAAGAGCAAAAAGAGAAGAG 1938 40.35 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARTQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKFRDQRDRPDLSAPESLQLYLDTRIEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWKSDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHSASHLELEHEKERNLRIANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQEVKDLYHLLEHELFSLDLAIKLQPLLDKISKLGGKLSSASSVPEVQLSKYVPALEKLATLRLLQQGIESDELRDHLTVLAESLNKARAMIYPPVRKSSKIGDILPDLADIVDKEHRRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSKKPVLDSEKLSKQALMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREE 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18758450 18771231 - MELO3C002819.2.1 Cme12g01085 344302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01085 646 Coils Coil 507 546 - -
Cme12g01085 646 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 457 - -
Cme12g01085 646 Coils Coil 615 646 - -
Cme12g01085 646 Gene3D - 363 472 - -
Cme12g01085 646 Gene3D - 269 346 - -
Cme12g01085 646 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 457 646 - -
Cme12g01085 646 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 457 IPR027512 GO:0005852
Cme12g01085 646 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 457 646 IPR027512 GO:0005852
Cme12g01085 646 Coils Coil 93 120 - -
Cme12g01085 646 Gene3D UVR domain 217 268 - -
Cme12g01085 646 Coils Coil 549 595 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g01290 Cme-Chr6:10656300 Cme12g01085 Cme-Chr12:18758450 2.63E-36 dispersed
Cme12g01081 Cme-Chr12:18741690 Cme12g01085 Cme-Chr12:18758450 0 proximal
Cme12g01085 Cme-Chr12:18758450 Cme12g01088 Cme-Chr12:18792706 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01085 K03254 - csv:101215504 1077.77