Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01088 ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGTGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAGATATCGAGCATGGCAGAAACCTCTAGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATCAAGCATTTTCTGCATCTTTCAACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGGAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTATGGGAGACATATCGAACAGTTCTGGAGATACTACGAAATAATTCAAAGTTGGAGGCGCTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGGTGTACAAAAGAACAACAGAATTTCGCCGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAGAGGGATCGACCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCCAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTTTGGATATCGGATAGCAATCTTTATCATGCATATGCATGGTTCAAACTTTTCTCCATCCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATCTGCAGCTGATAGCTTCATCTGTTATTTTGGCAGCGCTTGCAGTGTCTCCCTATGACTCTAAGCATGGTGCTTCCCACTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCTAATCTTATAGGGTTCAGTTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCCGAACTGGTGTCTAAAGGAGTCCTTAGCTGCACAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTGCTTAACAAAATATCGAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAAAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCAAGGAACATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGAGACCACCTGACCGTTCTTGCTGAATCCTTAAACAACGCAAGAGCTATGATCTACCCTCCAGTTGGTAAAGCCTCAAAAACAGGTGATATATTGCCGGACTTGGCAGATATTGTTGATAAAGAGCACAAAAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCTGGAACGACAGCTTTTGGAAATGGAACGCGAGGAGGAGTCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGACTTGCTGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAGGAAGCACAGGCTCTACTTCAGGAAGCTGAAAAGCGCGTTGGCAAAAAGAAGGGAAGCAGGAAACCGGAAAAGTTGTCGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTCGCCAAAACTATGGATTATTTAGAAAGAGCTAAAAGAGAAGAGGCAGCACCGTTAATTGAAGAAGAATTTCAGCAACGCTTGCTTGAAGAGAGAATGATTCATGAACGTAATCAGCAGATCTTAACATCAAGTCGGCTGTGGATGACAGTATTATTGAAGCCACTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGAATGGCGAGAATGTTGGAGAGTAAGAAAAGTTTCCAAGAAAGAGTAATTAGTCTTCGTCAAGAGGAATTCAGCAGACGTAGAACTGAGAGAGAAGAGCATATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGAAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCGGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATAGCTGAGAAGCAGAGACAGAGAGAGCGAGAGTTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTAGTAGTGCCAGATCAGGTGATGCTCCTGCTCGACCTGATGTTGCTCCTAGTTCTCGGCCTCTGGACCCCAGGACTGCTGCTCCTGCAGCTGCTGCAACATCCCCAGCAAAATACGTGCCAAAGTTTCGACGGAACGAAGGCTCCACCCCTGATGCACCACTATCTGAATCTGGTCGATGGGGAAGCAGCCGGCCTGATAATCGACCATCTCGACCGGACAGTTGGCGTAATGATGACAGCAGATCTGCATTTGGAAGTTCAAGACCATCATGGTCCTCATCCCGAGTTCGTTCCAGTACAGACCGCTGA 2928 43.07 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFLHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWFKLFSIQKSFNKNLSQKDLQLIASSVILAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLLSELVSKGVLSCTIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGNLGIESDGLRDHLTVLAESLNNARAMIYPPVGKASKTGDILPDLADIVDKEHKRLLARKSIIEKRKEELERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEEEFQQRLLEERMIHERNQQILTSSRLWMTVLLKPLEVELSKQRHEGDLKEKNRMARMLESKKSFQERVISLRQEEFSRRRTEREEHIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGSSARSGDAPARPDVAPSSRPLDPRTAAPAAAATSPAKYVPKFRRNEGSTPDAPLSESGRWGSSRPDNRPSRPDSWRNDDSRSAFGSSRPSWSSSRVRSSTDR 975
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18792706 18801405 - MELO3C002822.2.1 Cme12g01088 344305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01088 975 MobiDBLite consensus disorder prediction 825 871 - -
Cme12g01088 975 MobiDBLite consensus disorder prediction 952 975 - -
Cme12g01088 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 966 IPR027512 GO:0005852
Cme12g01088 975 Coils Coil 785 805 - -
Cme12g01088 975 Coils Coil 665 695 - -
Cme12g01088 975 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 961 IPR027512 GO:0005852
Cme12g01088 975 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 966 - -
Cme12g01088 975 MobiDBLite consensus disorder prediction 825 975 - -
Cme12g01088 975 Coils Coil 603 649 - -
Cme12g01088 975 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cme12g01088 975 Gene3D UVR domain 217 268 - -
Cme12g01088 975 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cme12g01088 975 Coils Coil 743 763 - -
Cme12g01088 975 Coils Coil 561 600 - -
Cme12g01088 975 Coils Coil 810 869 - -
Cme12g01088 975 Pfam PCI domain 374 509 IPR000717 -
Cme12g01088 975 MobiDBLite consensus disorder prediction 923 941 - -
Cme12g01088 975 Gene3D - 269 343 - -
Cme12g01088 975 Gene3D - 363 494 - -
Cme12g01088 975 SMART PINT_4 441 532 IPR000717 -
Cme12g01088 975 Coils Coil 93 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00847 Cme-Chr12:15252718 Cme12g01088 Cme-Chr12:18792706 5.56E-27 dispersed
Cme12g01081 Cme-Chr12:18741690 Cme12g01088 Cme-Chr12:18792706 0 dispersed
Cme12g01085 Cme-Chr12:18758450 Cme12g01088 Cme-Chr12:18792706 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01088 K03254 - csv:101215735 1542.32