Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01088 | ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGTGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAGATATCGAGCATGGCAGAAACCTCTAGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTAATCAAGCATTTTCTGCATCTTTCAACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGGAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTATGGGAGACATATCGAACAGTTCTGGAGATACTACGAAATAATTCAAAGTTGGAGGCGCTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGGTGTACAAAAGAACAACAGAATTTCGCCGATTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAACAAGTATAGAGACCAGAGGGATCGACCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAAGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCCAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTTTGGATATCGGATAGCAATCTTTATCATGCATATGCATGGTTCAAACTTTTCTCCATCCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATCTGCAGCTGATAGCTTCATCTGTTATTTTGGCAGCGCTTGCAGTGTCTCCCTATGACTCTAAGCATGGTGCTTCCCACTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCTAATCTTATAGGGTTCAGTTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCCGAACTGGTGTCTAAAGGAGTCCTTAGCTGCACAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTGCTTAACAAAATATCGAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTGCAATTGTCCCAATATGTTCCGGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAAAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCATGAAAGTTGATCATTCAAGGAACATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGAGACCACCTGACCGTTCTTGCTGAATCCTTAAACAACGCAAGAGCTATGATCTACCCTCCAGTTGGTAAAGCCTCAAAAACAGGTGATATATTGCCGGACTTGGCAGATATTGTTGATAAAGAGCACAAAAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCTGGAACGACAGCTTTTGGAAATGGAACGCGAGGAGGAGTCAAGAAGGTTAAAATTACTGAAGATAACTGAAGAAGCTGAGCAGAAGCGACTTGCTGCAGAATATGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAGGAAGCACAGGCTCTACTTCAGGAAGCTGAAAAGCGCGTTGGCAAAAAGAAGGGAAGCAGGAAACCGGAAAAGTTGTCGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTCGCCAAAACTATGGATTATTTAGAAAGAGCTAAAAGAGAAGAGGCAGCACCGTTAATTGAAGAAGAATTTCAGCAACGCTTGCTTGAAGAGAGAATGATTCATGAACGTAATCAGCAGATCTTAACATCAAGTCGGCTGTGGATGACAGTATTATTGAAGCCACTGGAGGTTGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGAATGGCGAGAATGTTGGAGAGTAAGAAAAGTTTCCAAGAAAGAGTAATTAGTCTTCGTCAAGAGGAATTCAGCAGACGTAGAACTGAGAGAGAAGAGCATATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTAAGAGAAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCGGAGAGGAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATAGCTGAGAAGCAGAGACAGAGAGAGCGAGAGTTGGAAGAAAAAGAAAGACTGAGGAAAGAAAGTCTCTTTGGTAGTAGTGCCAGATCAGGTGATGCTCCTGCTCGACCTGATGTTGCTCCTAGTTCTCGGCCTCTGGACCCCAGGACTGCTGCTCCTGCAGCTGCTGCAACATCCCCAGCAAAATACGTGCCAAAGTTTCGACGGAACGAAGGCTCCACCCCTGATGCACCACTATCTGAATCTGGTCGATGGGGAAGCAGCCGGCCTGATAATCGACCATCTCGACCGGACAGTTGGCGTAATGATGACAGCAGATCTGCATTTGGAAGTTCAAGACCATCATGGTCCTCATCCCGAGTTCGTTCCAGTACAGACCGCTGA | 2928 | 43.07 | MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFLHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWFKLFSIQKSFNKNLSQKDLQLIASSVILAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLLSELVSKGVLSCTIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIAMKVDHSRNIVLFGNLGIESDGLRDHLTVLAESLNNARAMIYPPVGKASKTGDILPDLADIVDKEHKRLLARKSIIEKRKEELERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEEEFQQRLLEERMIHERNQQILTSSRLWMTVLLKPLEVELSKQRHEGDLKEKNRMARMLESKKSFQERVISLRQEEFSRRRTEREEHIRQIIQARKAEREAKRKKIFYVRREEERIRILREEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGSSARSGDAPARPDVAPSSRPLDPRTAAPAAAATSPAKYVPKFRRNEGSTPDAPLSESGRWGSSRPDNRPSRPDSWRNDDSRSAFGSSRPSWSSSRVRSSTDR | 975 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 18792706 | 18801405 | - | MELO3C002822.2.1 | Cme12g01088 | 344305 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01088 | 975 | MobiDBLite | consensus disorder prediction | 825 | 871 | - | - | |
Cme12g01088 | 975 | MobiDBLite | consensus disorder prediction | 952 | 975 | - | - | |
Cme12g01088 | 975 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 966 | IPR027512 | GO:0005852 | |
Cme12g01088 | 975 | Coils | Coil | 785 | 805 | - | - | |
Cme12g01088 | 975 | Coils | Coil | 665 | 695 | - | - | |
Cme12g01088 | 975 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 961 | IPR027512 | GO:0005852 | |
Cme12g01088 | 975 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 966 | - | - | |
Cme12g01088 | 975 | MobiDBLite | consensus disorder prediction | 825 | 975 | - | - | |
Cme12g01088 | 975 | Coils | Coil | 603 | 649 | - | - | |
Cme12g01088 | 975 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | - | - | |
Cme12g01088 | 975 | Gene3D | UVR domain | 217 | 268 | - | - | |
Cme12g01088 | 975 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
Cme12g01088 | 975 | Coils | Coil | 743 | 763 | - | - | |
Cme12g01088 | 975 | Coils | Coil | 561 | 600 | - | - | |
Cme12g01088 | 975 | Coils | Coil | 810 | 869 | - | - | |
Cme12g01088 | 975 | Pfam | PCI domain | 374 | 509 | IPR000717 | - | |
Cme12g01088 | 975 | MobiDBLite | consensus disorder prediction | 923 | 941 | - | - | |
Cme12g01088 | 975 | Gene3D | - | 269 | 343 | - | - | |
Cme12g01088 | 975 | Gene3D | - | 363 | 494 | - | - | |
Cme12g01088 | 975 | SMART | PINT_4 | 441 | 532 | IPR000717 | - | |
Cme12g01088 | 975 | Coils | Coil | 93 | 120 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme12g00847 | Cme-Chr12:15252718 | Cme12g01088 | Cme-Chr12:18792706 | 5.56E-27 | dispersed | |
Cme12g01081 | Cme-Chr12:18741690 | Cme12g01088 | Cme-Chr12:18792706 | 0 | dispersed | |
Cme12g01085 | Cme-Chr12:18758450 | Cme12g01088 | Cme-Chr12:18792706 | 0 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01088 | K03254 | - | csv:101215735 | 1542.32 |