Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01093 ATGTCTTTTCTTCGACCTTACGGTAAGGTCGATGAAACCGACCAATTGAGGCTCGACGCTAGCCGGAGGACCCGTAGAAGGATTGTTGTCATTGTTTTATCCTCTGTTGTACTTGTTGCTGTTGTTGTTGCTGTTGTTTTTGGTACTAGAAATGCTTCAAATAACAATGATGACAGTAACAATCAAAATGGTTCTCTTTCAGCTTCAATCAAAGCAGTTTGTGATGTGACATTGTATCCTGATACATGTCAAAAGGCTTTTGGTCCTTTTGCTAACTCGAGCCACCTCGATCCTGGTCAAATATCGAAGCTTGCGGTTCAACTGGCTCTCGGTGAATTATCAAAAGTGGCCGACCACATTTTTGATCATGCTATTACCAATACGACTGACGATAAGACCATATTGGCTTTGAAAAATTGTCATGAACTTTTGGACTTAGCTTTGGATCATTTGAATATCACATTGTCTTCTAGTGATATCACGTTACTGAAAGCTGTGGATGATTTGAAAACATGGCTAACTTCAGCAGCTACTTACCAACAGACTTGCATCGATGGTCTTGCCGAAGTCGATCCGGCTTTGGCAGACCTCTTTGCAAATTTCTTGAAGAACTCCACTGAGTTGACTAGTAATGGACTTGCCATTGTGTCGTTCTTTTCAAAGCTGACAGATTCTTTAAGTCTACGACGATTGATGAGTTATGAAGATCGTCAAAGCAATGGAGATTGGGCACGCCCGATACTCCGAAAGTTGGCTCAAAGTGATATCAGGAAGCAGGCTGACATTGTTGTAGCAAAAGACAGTTCGGGGAAGTACAAAACAATCACTGAAGCTCTCAAGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTAATTTATGTGAAGAAGGGAACTTACAAGGAGAAAGTTGAAGTTGTGAAGAACAAATGGAATGTGGTTATGGTTGGTGATGGAATGAATGCAACCATAGTAAGTGGCAGCCTTAATGTCATAGATGGAACACCAACATTTTCAACTGCATCATTTGCTGCGAAGGGAAAAGGCTTCATTGCCATAGACATGGGATTCATAAACACGGCTGGACCGAGCAAACACCAAGCAGTCGCTCTGATGTCGACATCTGACCAATCAATCTTCTACCGTTGCCAAATGAATGCATACCAAGACACTCTCTACGCACACTCCAACCGTCAATTCTACCGTGAATGCAAGGTTTACGGCACAGTCGATTTCATCTTCGGAAACTCAGCAGTAGTCCTACAAAACTGCACCATTGCACCCAGGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACCGGCATTTCGATACAAGGTTCTTTGATCCAACCGTTTGACAACTTGAAAACTACCGAAACTTACCTCGGTCGTCCATGGAAGAACTACTCGACGACCGTGTTTATGCAAAGTAATTTGGGGAGCTTGATTCACCCATCTGGTTGGCTGCCATGGGTGGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCGTGGTTCTTCCACGTCCAAAAGAGTTAAATGGAAGGGTGTCAAGAACATTGACATTAAAACTGCCAAAAAGTTCACAGTTTCCTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCACTGCCACTCTCTGA 1704 42.96 MSFLRPYGKVDETDQLRLDASRRTRRRIVVIVLSSVVLVAVVVAVVFGTRNASNNNDDSNNQNGSLSASIKAVCDVTLYPDTCQKAFGPFANSSHLDPGQISKLAVQLALGELSKVADHIFDHAITNTTDDKTILALKNCHELLDLALDHLNITLSSSDITLLKAVDDLKTWLTSAATYQQTCIDGLAEVDPALADLFANFLKNSTELTSNGLAIVSFFSKLTDSLSLRRLMSYEDRQSNGDWARPILRKLAQSDIRKQADIVVAKDSSGKYKTITEALKAVPDKSKKRTVIYVKKGTYKEKVEVVKNKWNVVMVGDGMNATIVSGSLNVIDGTPTFSTASFAAKGKGFIAIDMGFINTAGPSKHQAVALMSTSDQSIFYRCQMNAYQDTLYAHSNRQFYRECKVYGTVDFIFGNSAVVLQNCTIAPRLPLLGQKNTITAQGRFDPNQNTGISIQGSLIQPFDNLKTTETYLGRPWKNYSTTVFMQSNLGSLIHPSGWLPWVGTSAPDTIFYAEFQNYGRGSSTSKRVKWKGVKNIDIKTAKKFTVSSFIDGKDWISKAQVPFTATL 567
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18847758 18849889 + MELO3C002815.2.1 Cme12g01093 344310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01093 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Cme12g01093 567 PANTHER PECTINESTERASE 19 563 - -
Cme12g01093 567 SUPERFAMILY Pectin lyase-like 259 566 IPR011050 -
Cme12g01093 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857
Cme12g01093 567 CDD PMEI-like_3 72 221 - -
Cme12g01093 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 216 IPR006501 GO:0004857
Cme12g01093 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Cme12g01093 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599|GO:0042545
Cme12g01093 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cme12g01093 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Cme12g01093 567 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 24-RELATED 19 563 - -
Cme12g01093 567 Gene3D - 256 567 IPR012334 -
Cme12g01093 567 SMART PMEI_2 65 215 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02031 Cme-Chr11:28124390 Cme12g01093 Cme-Chr12:18847758 5.82E-132 dispersed
Cme12g01093 Cme-Chr12:18847758 Cme02g00063 Cme-Chr2:557265 5.26E-142 dispersed
Cme12g01093 Cme-Chr12:18847758 Cme04g01396 Cme-Chr4:19793938 4.86E-169 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01093 - - csv:101210577 995.727