Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01105 ATGAGTCATTTTCCAGGGGATTTTAGGAGACCTGAATCAGCTAAAAGTAGATTGAAAGATTTATTGCTTCAGATAGATAATCAACTTTGTGCGGATTGTGGTGCCCCAGATCCCAAATGGGCCTCTGCGAATATTGGCGTGTTTATATGCTTAAAATGTAGTGGTGTGCATAGAAGCCTTGGAACACATATATCAAAGGTTTTGTCAATAACGTTGGATGAATGGTCTGACGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCTGCTAATGCAATATATGAGGCTTTTATCCCTGATGGATATACAAAGCCTGGACCAAGTGCCAGCCATGAGGAGCGTTCAAATTTCATTCGGTCTAAGTATGAACTTCAAGAATTTTTAAAACCAAGCTTGCGAATTGTATCCAATAACTCCTCAAAGAGTTCTGAGGAGCCAAGTTATTTTCAAGAGATCACTGATAGCTTTCGAAGCTCAAATTCTTCAAAGAAATCACCACAGGAAGGCATGGTTGAATTTATGGGATTATTGAAAGTCAAGGTGATTAAAGGCACAAACTTAGCCGTGAGGGATGTGAAGACCAGTGACCCTTTTGTTACCTTAACTCTTGGACAACAGACCGCTAAAACGACGGTGATAAAGAGCAACTTGAATCCAGTTTGGAATGAGGAACTCATGCTTTCGGTTCCTCTGGAATATGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATGATTTTATCTAATGACTTGATGGGCGAAGCAGAAATCGACCTCCAACCGATGATAACATCAGCAATAGCATTCGGAGATGCTGAAATGCTTGAGAACATGCAGATTGGAAAATGGTTGAAGTCAGATGACAATGCCCTTATCGATGATAGCGCTGTCGTAATCGTCGACGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGCACTTGGAACTAGAATGGATGCCTATTGATCAATAA 1002 41.22 MSHFPGDFRRPESAKSRLKDLLLQIDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHISKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSASHEERSNFIRSKYELQEFLKPSLRIVSNNSSKSSEEPSYFQEITDSFRSSNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDVKTSDPFVTLTLGQQTAKTTVIKSNLNPVWNEELMLSVPLEYGPLKLQVFDHDMILSNDLMGEAEIDLQPMITSAIAFGDAEMLENMQIGKWLKSDDNALIDDSAVVIVDGKVKQEVSLKLQNVESGEVHLELEWMPIDQ 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18945352 18949621 - MELO3C002808.2.1 Cme12g01105 344322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01105 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 9 333 - -
Cme12g01105 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 143 IPR001164 GO:0005096
Cme12g01105 333 Pfam C2 domain 177 266 IPR000008 -
Cme12g01105 333 Pfam Putative GTPase activating protein for Arf 17 131 IPR001164 GO:0005096
Cme12g01105 333 ProSiteProfiles C2 domain profile. 160 276 IPR000008 -
Cme12g01105 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
Cme12g01105 333 SMART C2_3c 178 273 IPR000008 -
Cme12g01105 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 333 IPR044518 GO:0005096|GO:0005543
Cme12g01105 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cme12g01105 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cme12g01105 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cme12g01105 333 SUPERFAMILY ArfGap/RecO-like zinc finger 16 132 IPR037278 -
Cme12g01105 333 CDD ArfGap 18 124 - -
Cme12g01105 333 Gene3D C2 domain 175 333 IPR035892 -
Cme12g01105 333 SMART arf_gap_3 16 137 IPR001164 GO:0005096
Cme12g01105 333 CDD C2_ArfGAP 177 320 - -
Cme12g01105 333 Gene3D Arf GTPase activating protein 7 136 IPR038508 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00084 Cme12g01105 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00732 Cme-Chr4:8448029 Cme12g01105 Cme-Chr12:18945352 4.34E-27 dispersed
Cme04g02608 Cme-Chr4:32015086 Cme12g01105 Cme-Chr12:18945352 6.42E-21 dispersed
Cme08g00083 Cme-Chr8:567674 Cme12g01105 Cme-Chr12:18945352 1.87E-89 dispersed
Cme08g00084 Cme-Chr8:570232 Cme12g01105 Cme-Chr12:18945352 1.75E-65 dispersed
Cme10g00034 Cme-Chr10:307339 Cme12g01105 Cme-Chr12:18945352 4.80E-100 dispersed
Cme10g01566 Cme-Chr10:20568660 Cme12g01105 Cme-Chr12:18945352 2.65E-21 dispersed
Cme10g01584 Cme-Chr10:20916516 Cme12g01105 Cme-Chr12:18945352 6.92E-34 dispersed
Cme12g01105 Cme-Chr12:18945352 Cme12g01829 Cme-Chr12:24675963 9.29E-37 dispersed
Cme12g01105 Cme-Chr12:18945352 Cme02g01681 Cme-Chr2:23935345 9.00E-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01105 K12486 - csv:101211569 634.409