Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01106 ATGGCTCTTGTCATGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGTCCAAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCCATTCTCTCTAATATTGAGCCTAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGTTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTTTGCAGACACAGGTCTCTCGTTTGGTATACGAGAACGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAGGATGCTAATAACCCAGCCGGTCTTCTTGCAATAGCTGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCGACAGGAACTGCTGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGCAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCCATGAAGGTGGCCGAAATTCTCAAGGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTTCTAAGTGTAATCTCTACAGGAAATGGAGGGACCATAGAACTCCTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACTACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCATTAACATCGTCTACTGGTGGTCCATCAGGGCCCCCTCCATCCAGTTTTGTAAGAGCTGAAATGCTTCCAAGCGGGTACCTTATTCGAGCTTGTGAGGGTGGTTCCCTTATTCACATTGTCGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTTTAAGGCCCCTTTATGAATCAACAAAGATTCTAGCTCAGAGAATGACCGTTGCTGCCTTACGCTATGTTCGGCAAATTGCTCAAGAGGCGAGTGGTGAAGTTCAGTTGGGTGGGGGCCGACAACCCGCTGTTTTAAGGACTTTCAGTCAAAGACTCTGTAGGGGTTTTAACGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGATGGAGTTGAGGACGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCACAATATAACACATCGTTATATCCTACTTTTGGAGGTGTATTATGTGCCAAGGCATCAATGTTGCTCCAGAATGTTCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGGTCAGAATGGGCTGATTATGGAGTCGATGCATACTCTGCTGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCAAGACCTGGTGGCTTCCCTGGTGGTCAGGTCATTTTACCACTTGCACATACGGTTGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTGTGTAGTGGGGTCGAGGAAAATACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGATGAATCATTTGCTGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAACAGAGATGCCTGGGGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGGACTAATCGCCCAGGAGGTGAAACTGATGTTACAAACTACAACCTTAGGTCGGTCTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCGAGACAATATGTACAAACTGTTGTGGGGTCAGTTCAAAGGGTTGCCATGGCTATCGCCCCCTCGCAGCTTGGCTCCCAGATCGGTCCAAAAAGCCTTCCCGGCTCCCCTGAGGCTCTCACATTAGCTCAGTGGATCACACGAAGCTATAGAATCCACTCAGGGGCAGAGCTCTTTCAAGTTGAATCTCAATCTGGTGATGCTATATTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACAAATGCATCTCCGGTATTCACATTTGCAAACCAAGCTGGACTTGACATGCTGGAAACTACCCTTGTTTCTCTTCAAGATATAACGCTCGACAAGATCCTCGATGATGCTGGTCGGAAGATACTGTGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGACCGGTGTCGTATGAACAGGCTATTGCCTGGAAAGTTCTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTTGTAAACTGGTCCTTTATGTGA 2535 46.43 MALVMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSVISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRMTVAALRYVRQIAQEASGEVQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGVEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARPGGFPGGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVEENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKTEMPGATRTLDLASTLEVRPGTNRPGGETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVQTVVGSVQRVAMAIAPSQLGSQIGPKSLPGSPEALTLAQWITRSYRIHSGAELFQVESQSGDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVSLQDITLDKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 18966772 18974307 - MELO3C002807.2.1 Cme12g01106 344323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01106 844 CDD homeodomain 18 78 IPR001356 GO:0003677
Cme12g01106 844 SMART HOX_1 15 81 IPR001356 GO:0003677
Cme12g01106 844 Gene3D - 185 377 IPR023393 -
Cme12g01106 844 SUPERFAMILY Bet v1-like 166 376 - -
Cme12g01106 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289
Cme12g01106 844 MobiDBLite consensus disorder prediction 126 156 - -
Cme12g01106 844 CDD bZIP 70 109 - -
Cme12g01106 844 SMART START_1 165 374 IPR002913 GO:0008289
Cme12g01106 844 Pfam MEKHLA domain 699 843 IPR013978 -
Cme12g01106 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Cme12g01106 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Cme12g01106 844 Coils Coil 87 107 - -
Cme12g01106 844 Pfam START domain 166 373 IPR002913 GO:0008289
Cme12g01106 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Cme12g01106 844 Gene3D - 10 84 - -
Cme12g01106 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 IPR044830 GO:0003700
Cme12g01106 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00088 Cme12g01106 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00182 Cme-Chr4:1356820 Cme12g01106 Cme-Chr12:18966772 0 dispersed
Cme05g01366 Cme-Chr5:22666912 Cme12g01106 Cme-Chr12:18966772 6.31E-16 dispersed
Cme06g02097 Cme-Chr6:26398778 Cme12g01106 Cme-Chr12:18966772 4.60E-26 dispersed
Cme08g00088 Cme-Chr8:595852 Cme12g01106 Cme-Chr12:18966772 0 dispersed
Cme12g00460 Cme-Chr12:7573593 Cme12g01106 Cme-Chr12:18966772 0 dispersed
Cme12g01106 Cme-Chr12:18966772 Cme08g00387 Cme-Chr8:2409975 2.22E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42320 PF01852 START 5.70E-51 CL0209 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01106 K09338 - csv:101211318 1645.56