Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01135 ATGTTACAACACCTTCCCTCAGAATCAGACGCTCTTAATTCCAATTCCAGCCAAAATTCTATGAGCAGCGAGAGTTGTAGTAGCTTCAGTCGTCTTTCATTTGATGCCGCCATTGATTTACCCACTTCCCGATCCTCACCCGCCAGTCTCCATTTAAAGCCTCATCGTTCATCTGATTTCGCTTACTCCGCTATTCGTCGTCGCAAATCTAAACTCACGTTTCGTGATTTTCGGCTTCTCCGTCGGATTGGTGCTGGTGACATTGGTACTGTTTATTTGTGTCAGTTGAGGAACTTGAGTAAAGGGTGTTGTTACGAAGATGAAGATGACGAAGACGACGACGACATCGACGACGAGGATGATGATGATGATGTTTCGTGTTTGTATGCGATGAAAGTCGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAAGTTCATAGAGCGGAAATGGAAAGGAAAATATTGAAGATGCTTGATCATCCGTTTTTGCCTACACTTTACGCTGAGTTTGAAGCTTCTCATTTCTCTTGTATTGTTATGGAGTTTTGTTCTGGTGGGGATTTGCATTCTCTCCGCCATAAACAGCCACGGAAACGCTTCTCTCTCACCTCCGCTAGATTTTATGCAGCGGAAGTTCTTGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTACCGAGACCTTAAACCGGAGAATGTTCTCGTCCGATCAGACGGTCACATTATGTTATCGGATTTTGATTTATCTCTCTGTTCCGACGCCACCCCTGCCGTTGAATCACCAAACTCTTCCCCCAACACGGCATTTCCCGAAACAACGGCGTACCCCAAAACTAACCCTGCCGTTTCCGCCACCTCCGCAGCTCCTTTTTCCTGCCTATACAACCGGCTTTTCCGGTCGAGGAAGGTCCAAACTCTGTCTCCCAACTGGCTCTTCGTCGCTGAGCCCGTTTCCGCTCGGTCCTGCTCCTTCGTTGGTACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGCGGGTCTCACGGTAACGCCGTCGACTGGTGGGCCTTTGGAATTTTTCTCTACGAGTTGATCTATGGCCGGACGCCGTTTGCGGCTTCGTCGAACGAGACGACGTTAAGAAGCATTATAAAGAAGCCGTTGACGTTTCCGACAGCCGTGCCGTCCGGCGCGCTTGAACACCACGCGCGGGACCTCATATCCGGATTGCTCAACAAGGACCCGACCCGGAGACTGGGGTCGAAACGCGGGTCCGCCGACATTAAGAAGCATCCATTCTTCAAAGGTCTCAACTTCGCGCTAATTCGATCGCTCACTCCTCCGGAAGTCCCCGGGGTTCGACGGCGGAAGGCGACCCCAGCTCCGGTGGCGAAAACTAAGGATCACAAGTCCGGTCAGGCGACCGGGTTCGATTATTTCTGA 1425 50.39 MLQHLPSESDALNSNSSQNSMSSESCSSFSRLSFDAAIDLPTSRSSPASLHLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNLSKGCCYEDEDDEDDDDIDDEDDDDDVSCLYAMKVVDKEALELKKKVHRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLTSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPNTAFPETTAYPKTNPAVSATSAAPFSCLYNRLFRSRKVQTLSPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNETTLRSIIKKPLTFPTAVPSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEVPGVRRRKATPAPVAKTKDHKSGQATGFDYF 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19370549 19372980 + MELO3C002781.2.1 Cme12g01135 344352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01135 474 MobiDBLite consensus disorder prediction 444 474 - -
Cme12g01135 474 Gene3D Transferase(Phosphotransferase) domain 1 183 251 - -
Cme12g01135 474 PANTHER FLIPPASE KINASE 1-RELATED 14 472 - -
Cme12g01135 474 Coils Coil 131 151 - -
Cme12g01135 474 Pfam Protein kinase domain 126 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01135 474 Pfam Protein kinase domain 322 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01135 474 Gene3D Transferase(Phosphotransferase) domain 1 322 446 - -
Cme12g01135 474 SMART serkin_6 77 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01135 474 MobiDBLite consensus disorder prediction 1 23 - -
Cme12g01135 474 Gene3D Phosphorylase Kinase; domain 1 75 182 - -
Cme12g01135 474 ProSiteProfiles Protein kinase domain profile. 77 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01135 474 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 14 472 - -
Cme12g01135 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Cme12g01135 474 SUPERFAMILY Protein kinase-like (PK-like) 56 444 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme12g00788 Cme-Chr12:14316880 Cme12g01135 Cme-Chr12:19370549 1.15E-130 dispersed
Cme12g01135 Cme-Chr12:19370549 Cme11g01897 Cme-Chr11:27108962 7.25E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65304 PF00069 Pkinase 6.80E-30 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01135 - - csv:101208129 876.315