Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01135 | ATGTTACAACACCTTCCCTCAGAATCAGACGCTCTTAATTCCAATTCCAGCCAAAATTCTATGAGCAGCGAGAGTTGTAGTAGCTTCAGTCGTCTTTCATTTGATGCCGCCATTGATTTACCCACTTCCCGATCCTCACCCGCCAGTCTCCATTTAAAGCCTCATCGTTCATCTGATTTCGCTTACTCCGCTATTCGTCGTCGCAAATCTAAACTCACGTTTCGTGATTTTCGGCTTCTCCGTCGGATTGGTGCTGGTGACATTGGTACTGTTTATTTGTGTCAGTTGAGGAACTTGAGTAAAGGGTGTTGTTACGAAGATGAAGATGACGAAGACGACGACGACATCGACGACGAGGATGATGATGATGATGTTTCGTGTTTGTATGCGATGAAAGTCGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAAGTTCATAGAGCGGAAATGGAAAGGAAAATATTGAAGATGCTTGATCATCCGTTTTTGCCTACACTTTACGCTGAGTTTGAAGCTTCTCATTTCTCTTGTATTGTTATGGAGTTTTGTTCTGGTGGGGATTTGCATTCTCTCCGCCATAAACAGCCACGGAAACGCTTCTCTCTCACCTCCGCTAGATTTTATGCAGCGGAAGTTCTTGTTGCTTTAGAGTACCTTCATATGCTTGGAATCATTTACCGAGACCTTAAACCGGAGAATGTTCTCGTCCGATCAGACGGTCACATTATGTTATCGGATTTTGATTTATCTCTCTGTTCCGACGCCACCCCTGCCGTTGAATCACCAAACTCTTCCCCCAACACGGCATTTCCCGAAACAACGGCGTACCCCAAAACTAACCCTGCCGTTTCCGCCACCTCCGCAGCTCCTTTTTCCTGCCTATACAACCGGCTTTTCCGGTCGAGGAAGGTCCAAACTCTGTCTCCCAACTGGCTCTTCGTCGCTGAGCCCGTTTCCGCTCGGTCCTGCTCCTTCGTTGGTACCCACGAGTACGTCTCGCCGGAAGTTGCCGCCGGCGGGTCTCACGGTAACGCCGTCGACTGGTGGGCCTTTGGAATTTTTCTCTACGAGTTGATCTATGGCCGGACGCCGTTTGCGGCTTCGTCGAACGAGACGACGTTAAGAAGCATTATAAAGAAGCCGTTGACGTTTCCGACAGCCGTGCCGTCCGGCGCGCTTGAACACCACGCGCGGGACCTCATATCCGGATTGCTCAACAAGGACCCGACCCGGAGACTGGGGTCGAAACGCGGGTCCGCCGACATTAAGAAGCATCCATTCTTCAAAGGTCTCAACTTCGCGCTAATTCGATCGCTCACTCCTCCGGAAGTCCCCGGGGTTCGACGGCGGAAGGCGACCCCAGCTCCGGTGGCGAAAACTAAGGATCACAAGTCCGGTCAGGCGACCGGGTTCGATTATTTCTGA | 1425 | 50.39 | MLQHLPSESDALNSNSSQNSMSSESCSSFSRLSFDAAIDLPTSRSSPASLHLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRNLSKGCCYEDEDDEDDDDIDDEDDDDDVSCLYAMKVVDKEALELKKKVHRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLTSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPNSSPNTAFPETTAYPKTNPAVSATSAAPFSCLYNRLFRSRKVQTLSPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGIFLYELIYGRTPFAASSNETTLRSIIKKPLTFPTAVPSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNFALIRSLTPPEVPGVRRRKATPAPVAKTKDHKSGQATGFDYF | 474 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 19370549 | 19372980 | + | MELO3C002781.2.1 | Cme12g01135 | 344352 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01135 | 474 | MobiDBLite | consensus disorder prediction | 444 | 474 | - | - | |
Cme12g01135 | 474 | Gene3D | Transferase(Phosphotransferase) domain 1 | 183 | 251 | - | - | |
Cme12g01135 | 474 | PANTHER | FLIPPASE KINASE 1-RELATED | 14 | 472 | - | - | |
Cme12g01135 | 474 | Coils | Coil | 131 | 151 | - | - | |
Cme12g01135 | 474 | Pfam | Protein kinase domain | 126 | 274 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01135 | 474 | Pfam | Protein kinase domain | 322 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01135 | 474 | Gene3D | Transferase(Phosphotransferase) domain 1 | 322 | 446 | - | - | |
Cme12g01135 | 474 | SMART | serkin_6 | 77 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01135 | 474 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Cme12g01135 | 474 | Gene3D | Phosphorylase Kinase; domain 1 | 75 | 182 | - | - | |
Cme12g01135 | 474 | ProSiteProfiles | Protein kinase domain profile. | 77 | 428 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01135 | 474 | PANTHER | SERINE/THREONINE KINASE FAMILY PROTEIN | 14 | 472 | - | - | |
Cme12g01135 | 474 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 224 | 236 | IPR008271 | GO:0004672|GO:0006468 | |
Cme12g01135 | 474 | SUPERFAMILY | Protein kinase-like (PK-like) | 56 | 444 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme12g00788 | Cme-Chr12:14316880 | Cme12g01135 | Cme-Chr12:19370549 | 1.15E-130 | dispersed | |
Cme12g01135 | Cme-Chr12:19370549 | Cme11g01897 | Cme-Chr11:27108962 | 7.25E-128 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65304 | PF00069 | Pkinase | 6.80E-30 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01135 | - | - | csv:101208129 | 876.315 |