Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01152 ATGAGGCTCTCTGCGGGTGGTTTTAGTCCTCAGGCTCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGTGTTGTTTATTTTCCACAAGGTCACAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTCGATGCCCAGATACCGAATTACCCAAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAACCTGACAATGCATGCAGATGCCGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAGAAAGTATTCCCCCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACTTGCATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGACGCTGTACTTTTTATCTGGAATGAGAAGAACCAATTACTCCTTGGAATTAGGCGTGCAAGTCGACCACAAACCGTGATGCCTTCATCCGTACTGTCAAGTGATAGCATGCATCTAGGGCTTCTTGCTGCTGCAGCTCATGCAGCAGCTACCATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGATGAGTCGACAGCAGGAGAACGACAGCCAAGAGTGTCTTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCGCTTAGACTGAAACGACCATGGCCGACTGGACTGCCTTCTTTCGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGCGGCATCCAATGTCTTAACTTTCAGGGAGCTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAATCTGACATGTATCAAGTCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATATCACCTGCATCTGTTCTTCAATTCCAGCAGCCCCAAAGCCTTCCTTGTCAGTCTTCTACCTTATTGCAGCCTCAGATGTTGCATCAGTCTCAATCTCAACAGGCGTTTCTACAATCTGTTCAAGAAAACCAGCAGCATTCGCAGCCGCAGTCTCAGTCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCCCAGCAATCATTCAATAATCATTCACAGCAGCATCAACAGCAACCAAGGCAGACGCAGCCACTCGATCATCAGCAGATTCCTTGTTCTATCCCTGCCATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTCACCGTCCTTGCAAACTGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAATCCTGTAACTAGTCCTGCTGTTTCCCCATTGCATAGCCTTGCGGGTTCCTTTGTCCAAGATGACTCATCTCAGCTGCTTAACCTTCAAAGAGCACATTCAGTAATTCCTGAAGCTGGTTGGCCATCAAAGAGAGCCGCTATTGATCCTGTCTGTACTGGAGCTTCTCAATATTTTCTACCTCAAGTTGAAATGTTGGGAACACCACAGAGTAGTATTTCTCAGAATACTGTTGCATTACCACCCTTTCCTGGAAGGGAATGTCCTATTGATGACCGAGAAGAGGGTTCTGATCCTCAAAACCATGTTTTATTTGGTGTGAATATAGATTCTTCATCCCTTCTAATGCAAAATGGGATGTCAAACCTTAGGGGAGTTGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTAGCAATTTTTCTGTAAATCCAACTATGACATCCTCGAATTGCATCGATGAATCAGGTCTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCACAAATCAGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCTTAGAAGGCGAGTTGGAAGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTTCTCGGTGATGGCCCGTGGCCGGAGTTTGTAAACAGCGTGTGGTGCATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGAAAACGAGGTTTAGAACTTCTGAACTCGGTGCCAATTCAGAGGCTTTCGAACAGCACCTGCGACGACTATGGCAGTCGACAGGACTCAAGAAATTTGATTTCAGGGATAGCCTCTGTCGGGCCTCTTGACTACTGA 2709 46.99 MRLSAGGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGAGVSPWMQPRLDPSMMGMQSDMYQVMATAALQEMRAIDYSKISPASVLQFQQPQSLPCQSSTLLQPQMLHQSQSQQAFLQSVQENQQHSQPQSQSQTQSHHLQPQLQPQQSFNNHSQQHQQQPRQTQPLDHQQIPCSIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPAVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPEAGWPSKRAAIDPVCTGASQYFLPQVEMLGTPQSSISQNTVALPPFPGRECPIDDREEGSDPQNHVLFGVNIDSSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGSNFSVNPTMTSSNCIDESGLLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGIASVGPLDY 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19599255 19605805 + MELO3C002771.2.1 Cme12g01152 344369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01152 902 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cme12g01152 902 SMART B3_2 127 229 IPR003340 GO:0003677
Cme12g01152 902 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cme12g01152 902 MobiDBLite consensus disorder prediction 491 547 - -
Cme12g01152 902 Pfam AUX/IAA family 760 858 IPR033389 -
Cme12g01152 902 Gene3D - 767 858 - -
Cme12g01152 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 881 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme12g01152 902 Gene3D - 291 363 - -
Cme12g01152 902 PANTHER AUXIN RESPONSE FACTOR 6 1 881 - -
Cme12g01152 902 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme12g01152 902 ProSiteProfiles PB1 domain profile. 769 853 IPR000270 GO:0005515
Cme12g01152 902 Gene3D - 125 228 IPR015300 -
Cme12g01152 902 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cme12g01152 902 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cme12g01152 902 SUPERFAMILY CAD & PB1 domains 759 844 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00111 Cme12g01152 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02083 Cme-Chr5:29030924 Cme12g01152 Cme-Chr12:19599255 7.09E-21 dispersed
Cme10g01685 Cme-Chr10:23353579 Cme12g01152 Cme-Chr12:19599255 2.15E-14 dispersed
Cme01g00628 Cme-Chr1:5357789 Cme12g01152 Cme-Chr12:19599255 1.98E-20 transposed
Cme02g02113 Cme-Chr2:26881616 Cme12g01152 Cme-Chr12:19599255 2.15E-15 transposed
Cme03g01275 Cme-Chr3:22349886 Cme12g01152 Cme-Chr12:19599255 1.91E-75 transposed
Cme03g01500 Cme-Chr3:24227557 Cme12g01152 Cme-Chr12:19599255 4.33E-59 transposed
Cme04g01556 Cme-Chr4:22754244 Cme12g01152 Cme-Chr12:19599255 2.08E-24 transposed
Cme08g02302 Cme-Chr8:30020233 Cme12g01152 Cme-Chr12:19599255 2.64E-79 transposed
Cme09g01853 Cme-Chr9:22743745 Cme12g01152 Cme-Chr12:19599255 1.59E-12 transposed
Cme11g01785 Cme-Chr11:26016763 Cme12g01152 Cme-Chr12:19599255 6.18E-18 transposed
Cme11g01803 Cme-Chr11:26202658 Cme12g01152 Cme-Chr12:19599255 7.92E-70 transposed
Cme01g00630 Cme-Chr1:5358964 Cme12g01152 Cme-Chr12:19599255 1.94E-94 transposed
Cme12g01152 Cme-Chr12:19599255 Cme08g00111 Cme-Chr8:821892 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42321 PF02309 AUX_IAA 3.10E-07 CL0072 Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01152 - - csv:101211705 1674.83