Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01152 ATGAGGCTCTCTGCGGGTGGTTTTAGTCCTCAGGCTCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGTGTTGTTTATTTTCCACAAGGTCACAGTGAGCAGGTTGCTGCATCTACCAATAAAGAGGTCGATGCCCAGATACCGAATTACCCAAGTTTACCGCCGCAGCTCATTTGTCAGCTTCACAACCTGACAATGCATGCAGATGCCGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTGAAGGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTATTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGAGGTTTTTCTGTTCCTCGCCGTGCTGCTGAGAAAGTATTCCCCCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACTTGCATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGTGACGCTGTACTTTTTATCTGGAATGAGAAGAACCAATTACTCCTTGGAATTAGGCGTGCAAGTCGACCACAAACCGTGATGCCTTCATCCGTACTGTCAAGTGATAGCATGCATCTAGGGCTTCTTGCTGCTGCAGCTCATGCAGCAGCTACCATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGATGAGTCGACAGCAGGAGAACGACAGCCAAGAGTGTCTTTGTGGGAAATTGAACCACTGACAACATTTCCAATGTATCCATCACCGTTTCCGCTTAGACTGAAACGACCATGGCCGACTGGACTGCCTTCTTTCGGCATCAAGGATAGTGACCTCGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGCGGCATCCAATGTCTTAACTTTCAGGGAGCTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAATCTGACATGTATCAAGTCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATATCACCTGCATCTGTTCTTCAATTCCAGCAGCCCCAAAGCCTTCCTTGTCAGTCTTCTACCTTATTGCAGCCTCAGATGTTGCATCAGTCTCAATCTCAACAGGCGTTTCTACAATCTGTTCAAGAAAACCAGCAGCATTCGCAGCCGCAGTCTCAGTCTCAAACTCAGTCGCATCATCTTCAGCCACAATTGCAGCCCCAGCAATCATTCAATAATCATTCACAGCAGCATCAACAGCAACCAAGGCAGACGCAGCCACTCGATCATCAGCAGATTCCTTGTTCTATCCCTGCCATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTCACCGTCCTTGCAAACTGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAATCCTGTAACTAGTCCTGCTGTTTCCCCATTGCATAGCCTTGCGGGTTCCTTTGTCCAAGATGACTCATCTCAGCTGCTTAACCTTCAAAGAGCACATTCAGTAATTCCTGAAGCTGGTTGGCCATCAAAGAGAGCCGCTATTGATCCTGTCTGTACTGGAGCTTCTCAATATTTTCTACCTCAAGTTGAAATGTTGGGAACACCACAGAGTAGTATTTCTCAGAATACTGTTGCATTACCACCCTTTCCTGGAAGGGAATGTCCTATTGATGACCGAGAAGAGGGTTCTGATCCTCAAAACCATGTTTTATTTGGTGTGAATATAGATTCTTCATCCCTTCTAATGCAAAATGGGATGTCAAACCTTAGGGGAGTTGGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTAGCAATTTTTCTGTAAATCCAACTATGACATCCTCGAATTGCATCGATGAATCAGGTCTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCACAAATCAGGGACCTACAGTAGGTCGTTAGATATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCTTAGAAGGCGAGTTGGAAGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTTCTCGGTGATGGCCCGTGGCCGGAGTTTGTAAACAGCGTGTGGTGCATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGAAAACGAGGTTTAGAACTTCTGAACTCGGTGCCAATTCAGAGGCTTTCGAACAGCACCTGCGACGACTATGGCAGTCGACAGGACTCAAGAAATTTGATTTCAGGGATAGCCTCTGTCGGGCCTCTTGACTACTGA 2709 46.99 MRLSAGGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNKEVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGAGVSPWMQPRLDPSMMGMQSDMYQVMATAALQEMRAIDYSKISPASVLQFQQPQSLPCQSSTLLQPQMLHQSQSQQAFLQSVQENQQHSQPQSQSQTQSHHLQPQLQPQQSFNNHSQQHQQQPRQTQPLDHQQIPCSIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPAVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPEAGWPSKRAAIDPVCTGASQYFLPQVEMLGTPQSSISQNTVALPPFPGRECPIDDREEGSDPQNHVLFGVNIDSSSLLMQNGMSNLRGVGNDSVSTTLPFSSNYMSTAGSNFSVNPTMTSSNCIDESGLLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGIASVGPLDY 902
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19599255 19605805 + MELO3C002771.2.1 Cme12g01152 344369

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01152 902 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cme12g01152 902 SMART B3_2 127 229 IPR003340 GO:0003677
Cme12g01152 902 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cme12g01152 902 MobiDBLite consensus disorder prediction 491 547 - -
Cme12g01152 902 Pfam AUX/IAA family 760 858 IPR033389 -
Cme12g01152 902 Gene3D - 767 858 - -
Cme12g01152 902 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 881 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cme12g01152 902 Gene3D - 291 363 - -
Cme12g01152 902 PANTHER AUXIN RESPONSE FACTOR 6 1 881 - -
Cme12g01152 902 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cme12g01152 902 ProSiteProfiles PB1 domain profile. 769 853 IPR000270 GO:0005515
Cme12g01152 902 Gene3D - 125 228 IPR015300 -
Cme12g01152 902 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cme12g01152 902 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Cme12g01152 902 SUPERFAMILY CAD & PB1 domains 759 844 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01152 - - - csv:101211705 1674.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cme08g00111 Cme12g01152 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g02083 Cme-Chr5:29030924 Cme12g01152 Cme-Chr12:19599255 7.09E-21 dispersed
Cme10g01685 Cme-Chr10:23353579 Cme12g01152 Cme-Chr12:19599255 2.15E-14 dispersed
Cme01g00628 Cme-Chr1:5357789 Cme12g01152 Cme-Chr12:19599255 1.98E-20 transposed
Cme02g02113 Cme-Chr2:26881616 Cme12g01152 Cme-Chr12:19599255 2.15E-15 transposed
Cme03g01275 Cme-Chr3:22349886 Cme12g01152 Cme-Chr12:19599255 1.91E-75 transposed
Cme03g01500 Cme-Chr3:24227557 Cme12g01152 Cme-Chr12:19599255 4.33E-59 transposed
Cme04g01556 Cme-Chr4:22754244 Cme12g01152 Cme-Chr12:19599255 2.08E-24 transposed
Cme08g02302 Cme-Chr8:30020233 Cme12g01152 Cme-Chr12:19599255 2.64E-79 transposed
Cme09g01853 Cme-Chr9:22743745 Cme12g01152 Cme-Chr12:19599255 1.59E-12 transposed
Cme11g01785 Cme-Chr11:26016763 Cme12g01152 Cme-Chr12:19599255 6.18E-18 transposed
Cme11g01803 Cme-Chr11:26202658 Cme12g01152 Cme-Chr12:19599255 7.92E-70 transposed
Cme01g00630 Cme-Chr1:5358964 Cme12g01152 Cme-Chr12:19599255 1.94E-94 transposed
Cme12g01152 Cme-Chr12:19599255 Cme08g00111 Cme-Chr8:821892 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g480 . Blo11g00225 . Bda09g00878 . . . . Cmo13g00540 . Cma03g01429 . Car03g01289 . Sed14g1598 Cpe09g00742 . Bhi03g00112 Tan03g2736 Cmetu09g1255 . Hepe04g2022 . . Cla01g02432 Cam01g2547 Cec04g2197 Cco04g2271 Clacu01g2567 Cmu01g2432 Cre04g2093 . . . . . Csa06g03820 Chy12g00362 Cme08g00111 Blo08g00564 . . . . . Bma07g00773 . Sed08g2648 Cmo03g01425 . Cma13g00511 Cma18g00491 Car13g00401 Car18g00462 Cpe19g01157 Cpe20g00545 Bhi08g02023 Tan05g2676 Cmetu12g1486 Lac10g1118 Hepe07g1742 . . Cla03g00607 Cam03g0796 Cec03g0767 Cco03g0798 Clacu03g0651 Cmu03g1247 Cre03g1075 Lsi02g00922 Csa01g02582 . Cme12g01152
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme03g00482 . 74 276 B3 DNA Binding Superfamily AT3G26790 55.2 2.2e-63 239.6
Cme08g00291 . 105 274 B3 DNA Binding Superfamily AT1G28300 51.8 8.3e-38 154.8
Cme10g00289 . 16 344 B3 DNA Binding Superfamily AT1G25560 62.8 3.4e-108 388.7
Cme09g00779 . 34 307 B3 DNA Binding Superfamily AT1G25560 62.3 5.4e-90 328.2
Cme04g02367 . 41 159 B3 DNA Binding Superfamily AT1G25560 65.5 9.7e-39 157.9
Cme09g01901 . 53 161 B3 DNA Binding Superfamily AT1G25560 66.1 5.3e-37 152.1
Cme11g02307 . 96 211 B3 DNA Binding Superfamily AT1G25560 62.1 7.0e-37 151.8
Cme09g01901 . 52 166 B3 DNA Binding Superfamily AT1G01030 84.5 1.3e-53 207.2
Cme07g01632 . 62 171 B3 DNA Binding Superfamily AT1G01030 79.5 2.1e-48 189.9
Cme10g00289 . 179 287 B3 DNA Binding Superfamily AT1G01030 67.0 1.0e-37 154.5
Cme08g02302 . 14 696 B3 DNA Binding Superfamily AT4G30080 58.5 4.1e-216 748.0
Cme11g01803 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.3 3.0e-211 731.9
Cme03g01275 . 8 689 B3 DNA Binding Superfamily AT4G30080 54.8 1.0e-198 690.3
Cme11g00493 . 16 380 B3 DNA Binding Superfamily AT3G18990 57.8 2.0e-103 372.9
Cme10g01685 . 5 673 B3 DNA Binding Superfamily AT1G59750 68.5 3.4e-247 851.3
Cme07g01536 . 19 667 B3 DNA Binding Superfamily AT1G59750 50.2 8.5e-158 554.3
Cme01g00630 . 1 341 B3 DNA Binding Superfamily AT1G59750 63.3 3.5e-119 426.0
Cme08g00111 CCT 23 383 B3 DNA Binding Superfamily AT1G59750 55.6 1.1e-107 387.9
Cme12g01152 CCT 23 396 B3 DNA Binding Superfamily AT1G59750 53.4 2.2e-105 380.2
Cme05g01243 . 20 412 B3 DNA Binding Superfamily AT1G59750 50.3 4.1e-104 375.9
Cme05g02083 CCT 23 358 B3 DNA Binding Superfamily AT1G59750 54.4 1.0e-102 371.3
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT1G59750 51.4 6.0e-79 292.4
Cme11g01803 . 3 688 B3 DNA Binding Superfamily AT2G28350 58.2 1.5e-210 729.6
Cme08g02302 . 13 696 B3 DNA Binding Superfamily AT2G28350 54.9 3.2e-197 685.3
Cme03g01275 . 13 686 B3 DNA Binding Superfamily AT2G28350 50.6 1.0e-171 600.5
Cme07g01536 . 19 670 B3 DNA Binding Superfamily AT2G46530 54.4 3.1e-178 622.1
Cme09g01853 . 18 671 B3 DNA Binding Superfamily AT2G46530 52.7 1.9e-175 612.8
Cme10g01685 . 13 663 B3 DNA Binding Superfamily AT2G46530 51.4 6.8e-165 577.8
Cme01g00630 . 1 326 B3 DNA Binding Superfamily AT2G46530 73.7 1.2e-132 470.7
Cme08g00111 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 51.6 7.1e-98 355.1
Cme12g01152 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 50.1 7.4e-95 345.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT2G46530 50.5 1.1e-74 278.1
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34310 51.4 2.1e-91 333.6
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35540 51.7 2.1e-94 343.6
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35520 51.8 2.8e-91 333.2
Cme08g02302 . 14 696 B3 DNA Binding Superfamily AT4G30080 58.5 4.1e-216 748.0
Cme11g01803 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.3 3.0e-211 731.9
Cme03g01275 . 8 689 B3 DNA Binding Superfamily AT4G30080 54.8 1.0e-198 690.3
Cme07g01536 . 55 670 B3 DNA Binding Superfamily AT3G61830 51.4 2.2e-159 559.3
Cme09g01853 . 54 678 B3 DNA Binding Superfamily AT3G61830 51.3 2.3e-156 549.3
Cme10g01685 . 53 644 B3 DNA Binding Superfamily AT3G61830 51.2 5.3e-153 538.1
Cme01g00630 . 1 324 B3 DNA Binding Superfamily AT3G61830 72.1 2.2e-135 479.6
Cme08g00111 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 53.2 7.2e-86 315.1
Cme12g01152 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 51.4 4.4e-83 305.8
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT3G61830 51.1 2.0e-75 280.4
Cme05g02083 CCT 1 1110 B3 DNA Binding Superfamily AT1G19220 62.5 0.0e+00 1177.2
Cme08g00111 CCT 1 468 B3 DNA Binding Superfamily AT1G19220 59.2 2.1e-153 540.4
Cme02g02113 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.8 6.2e-105 379.4
Cme10g01685 . 26 387 B3 DNA Binding Superfamily AT1G19220 50.7 2.8e-97 354.0
Cme08g00264 . 46 379 B3 DNA Binding Superfamily AT1G19220 50.1 1.5e-90 331.6
Cme01g00630 . 2 310 B3 DNA Binding Superfamily AT1G35240 53.5 5.6e-92 335.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34410 52.0 6.1e-94 342.0
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34390 53.7 5.4e-95 345.5
Cme07g01536 . 25 229 B3 DNA Binding Superfamily AT1G43950 55.8 6.8e-59 224.2
Cme09g01853 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.8 5.8e-58 221.1
Cme10g01685 . 19 227 B3 DNA Binding Superfamily AT1G43950 51.2 3.7e-57 218.4
Cme02g02113 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 6.4e-57 217.6
Cme01g00630 . 2 160 B3 DNA Binding Superfamily AT1G43950 54.7 1.4e-40 163.3
Cme08g00264 . 149 434 B3 DNA Binding Superfamily AT2G33860 66.2 1.1e-108 390.6
Cme11g01785 . 168 451 B3 DNA Binding Superfamily AT2G33860 57.7 1.4e-90 330.5
Cme02g02113 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 1.1e-76 284.3
Cme08g00111 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 7.0e-71 265.0
Cme12g01152 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 1.2e-70 264.2
Cme05g02083 CCT 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 5.0e-69 258.8
Cme07g01536 . 130 357 B3 DNA Binding Superfamily AT2G33860 52.4 1.9e-68 256.9
Cme04g00486 . 51 309 B3 DNA Binding Superfamily AT2G33860 53.5 4.3e-68 255.8
Cme05g01243 . 145 376 B3 DNA Binding Superfamily AT2G33860 54.3 9.5e-68 254.6
Cme01g00630 . 61 288 B3 DNA Binding Superfamily AT2G33860 52.4 2.0e-65 246.9
Cme09g01853 . 129 356 B3 DNA Binding Superfamily AT2G33860 51.1 1.7e-64 243.8
Cme11g01785 . 48 802 B3 DNA Binding Superfamily AT5G60450 60.3 2.2e-250 862.1
Cme08g00111 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.9 6.9e-103 372.1
Cme12g01152 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.7 9.0e-103 371.7
Cme05g02083 CCT 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 1.4e-98 357.8
Cme04g00486 . 1 286 B3 DNA Binding Superfamily AT5G60450 51.5 1.2e-78 291.6
Cme04g00486 . 1 841 B3 DNA Binding Superfamily AT1G19850 60.1 3.5e-255 878.2
Cme08g00111 CCT 19 367 B3 DNA Binding Superfamily AT1G19850 65.6 2.9e-137 486.5
Cme10g01685 . 16 357 B3 DNA Binding Superfamily AT1G19850 52.2 3.5e-98 356.7
Cme12g01152 CCT 1 898 B3 DNA Binding Superfamily AT1G30330 70.5 0.0e+00 1171.4
Cme08g00111 CCT 1 718 B3 DNA Binding Superfamily AT1G30330 71.3 4.3e-272 934.5
Cme10g01685 . 23 383 B3 DNA Binding Superfamily AT1G30330 54.0 5.0e-103 372.9
Cme07g01536 . 25 379 B3 DNA Binding Superfamily AT1G30330 52.1 1.6e-101 367.9
Cme09g01853 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.1 1.1e-97 355.1
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT1G30330 53.5 2.8e-82 303.9
Cme05g02083 CCT 1 1094 B3 DNA Binding Superfamily AT5G20730 58.1 0.0e+00 1076.6
Cme08g00111 CCT 4 468 B3 DNA Binding Superfamily AT5G20730 59.5 4.6e-151 532.7
Cme12g01152 CCT 4 469 B3 DNA Binding Superfamily AT5G20730 59.1 4.6e-151 532.7
Cme02g02113 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.8 9.4e-104 375.6
Cme10g01685 . 6 360 B3 DNA Binding Superfamily AT5G20730 51.0 4.7e-95 346.7
Cme12g01152 CCT 97 861 B3 DNA Binding Superfamily AT5G37020 53.2 4.2e-187 651.7
Cme08g00111 CCT 97 464 B3 DNA Binding Superfamily AT5G37020 77.3 4.0e-161 565.5
Cme05g02083 CCT 96 362 B3 DNA Binding Superfamily AT5G37020 71.1 1.0e-108 391.3
Cme05g01243 . 115 472 B3 DNA Binding Superfamily AT5G37020 58.6 1.9e-107 387.1
Cme01g00630 . 54 288 B3 DNA Binding Superfamily AT5G37020 55.2 1.7e-71 267.7
Cme09g01853 . 20 672 B3 DNA Binding Superfamily AT4G23980 57.7 6.2e-198 687.6
Cme07g01536 . 1 667 B3 DNA Binding Superfamily AT4G23980 56.4 3.2e-194 675.2
Cme10g01685 . 16 644 B3 DNA Binding Superfamily AT4G23980 52.8 1.0e-168 590.5
Cme01g00630 . 2 456 B3 DNA Binding Superfamily AT4G23980 57.4 8.8e-136 481.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT4G23980 53.3 2.5e-82 303.5
Cme02g02113 . 36 828 B3 DNA Binding Superfamily AT5G62000 62.4 4.5e-284 974.2
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT5G62000 69.5 8.0e-116 415.2
Cme08g00111 CCT 20 376 B3 DNA Binding Superfamily AT5G62000 56.1 1.1e-109 394.8
Cme05g02083 CCT 23 380 B3 DNA Binding Superfamily AT5G62000 54.0 1.3e-105 381.3
Cme08g00291 . 105 274 B3 DNA Binding Superfamily AT1G28300 51.8 8.3e-38 154.8
Cme03g00482 . 74 276 B3 DNA Binding Superfamily AT3G26790 55.2 2.2e-63 239.6
Cme05g02083 CCT 1 1110 B3 DNA Binding Superfamily AT1G19220 62.5 0.0e+00 1177.2
Cme08g00111 CCT 1 468 B3 DNA Binding Superfamily AT1G19220 59.2 2.1e-153 540.4
Cme02g02113 . 41 396 B3 DNA Binding Superfamily AT1G19220 52.8 6.2e-105 379.4
Cme10g01685 . 26 387 B3 DNA Binding Superfamily AT1G19220 50.7 2.8e-97 354.0
Cme08g00264 . 46 379 B3 DNA Binding Superfamily AT1G19220 50.1 1.5e-90 331.6
Cme04g00486 . 1 841 B3 DNA Binding Superfamily AT1G19850 60.1 3.5e-255 878.2
Cme08g00111 CCT 19 367 B3 DNA Binding Superfamily AT1G19850 65.6 2.9e-137 486.5
Cme10g01685 . 16 357 B3 DNA Binding Superfamily AT1G19850 52.2 3.5e-98 356.7
Cme12g01152 CCT 1 898 B3 DNA Binding Superfamily AT1G30330 70.5 0.0e+00 1171.4
Cme08g00111 CCT 1 718 B3 DNA Binding Superfamily AT1G30330 71.3 4.3e-272 934.5
Cme10g01685 . 23 383 B3 DNA Binding Superfamily AT1G30330 54.0 5.0e-103 372.9
Cme07g01536 . 25 379 B3 DNA Binding Superfamily AT1G30330 52.1 1.6e-101 367.9
Cme09g01853 . 24 397 B3 DNA Binding Superfamily AT1G30330 50.1 1.1e-97 355.1
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT1G30330 53.5 2.8e-82 303.9
Cme05g02083 CCT 1 1094 B3 DNA Binding Superfamily AT5G20730 58.1 0.0e+00 1076.6
Cme08g00111 CCT 4 468 B3 DNA Binding Superfamily AT5G20730 59.5 4.6e-151 532.7
Cme12g01152 CCT 4 469 B3 DNA Binding Superfamily AT5G20730 59.1 4.6e-151 532.7
Cme02g02113 . 41 393 B3 DNA Binding Superfamily AT5G20730 52.8 9.4e-104 375.6
Cme10g01685 . 6 360 B3 DNA Binding Superfamily AT5G20730 51.0 4.7e-95 346.7
Cme12g01152 CCT 97 861 B3 DNA Binding Superfamily AT5G37020 53.2 4.2e-187 651.7
Cme08g00111 CCT 97 464 B3 DNA Binding Superfamily AT5G37020 77.3 4.0e-161 565.5
Cme05g02083 CCT 96 362 B3 DNA Binding Superfamily AT5G37020 71.1 1.0e-108 391.3
Cme05g01243 . 115 472 B3 DNA Binding Superfamily AT5G37020 58.6 1.9e-107 387.1
Cme01g00630 . 54 288 B3 DNA Binding Superfamily AT5G37020 55.2 1.7e-71 267.7
Cme08g00264 . 149 434 B3 DNA Binding Superfamily AT2G33860 66.2 1.1e-108 390.6
Cme11g01785 . 168 451 B3 DNA Binding Superfamily AT2G33860 57.7 1.4e-90 330.5
Cme02g02113 . 147 436 B3 DNA Binding Superfamily AT2G33860 51.0 1.1e-76 284.3
Cme08g00111 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 7.0e-71 265.0
Cme12g01152 CCT 127 358 B3 DNA Binding Superfamily AT2G33860 56.9 1.2e-70 264.2
Cme05g02083 CCT 126 356 B3 DNA Binding Superfamily AT2G33860 54.5 5.0e-69 258.8
Cme07g01536 . 130 357 B3 DNA Binding Superfamily AT2G33860 52.4 1.9e-68 256.9
Cme04g00486 . 51 309 B3 DNA Binding Superfamily AT2G33860 53.5 4.3e-68 255.8
Cme05g01243 . 145 376 B3 DNA Binding Superfamily AT2G33860 54.3 9.5e-68 254.6
Cme01g00630 . 61 288 B3 DNA Binding Superfamily AT2G33860 52.4 2.0e-65 246.9
Cme09g01853 . 129 356 B3 DNA Binding Superfamily AT2G33860 51.1 1.7e-64 243.8
Cme11g01785 . 48 802 B3 DNA Binding Superfamily AT5G60450 60.3 2.2e-250 862.1
Cme08g00111 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.9 6.9e-103 372.1
Cme12g01152 CCT 7 377 B3 DNA Binding Superfamily AT5G60450 50.7 9.0e-103 371.7
Cme05g02083 CCT 14 374 B3 DNA Binding Superfamily AT5G60450 50.1 1.4e-98 357.8
Cme04g00486 . 1 286 B3 DNA Binding Superfamily AT5G60450 51.5 1.2e-78 291.6
Cme10g01685 . 5 673 B3 DNA Binding Superfamily AT1G59750 68.5 3.4e-247 851.3
Cme07g01536 . 19 667 B3 DNA Binding Superfamily AT1G59750 50.2 8.5e-158 554.3
Cme01g00630 . 1 341 B3 DNA Binding Superfamily AT1G59750 63.3 3.5e-119 426.0
Cme08g00111 CCT 23 383 B3 DNA Binding Superfamily AT1G59750 55.6 1.1e-107 387.9
Cme12g01152 CCT 23 396 B3 DNA Binding Superfamily AT1G59750 53.4 2.2e-105 380.2
Cme05g01243 . 20 412 B3 DNA Binding Superfamily AT1G59750 50.3 4.1e-104 375.9
Cme05g02083 CCT 23 358 B3 DNA Binding Superfamily AT1G59750 54.4 1.0e-102 371.3
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT1G59750 51.4 6.0e-79 292.4
Cme02g02113 . 36 828 B3 DNA Binding Superfamily AT5G62000 62.4 4.5e-284 974.2
Cme01g00630 . 1 288 B3 DNA Binding Superfamily AT5G62000 69.5 8.0e-116 415.2
Cme08g00111 CCT 20 376 B3 DNA Binding Superfamily AT5G62000 56.1 1.1e-109 394.8
Cme05g02083 CCT 23 380 B3 DNA Binding Superfamily AT5G62000 54.0 1.3e-105 381.3
Cme07g01536 . 19 670 B3 DNA Binding Superfamily AT2G46530 54.4 3.1e-178 622.1
Cme09g01853 . 18 671 B3 DNA Binding Superfamily AT2G46530 52.7 1.9e-175 612.8
Cme10g01685 . 13 663 B3 DNA Binding Superfamily AT2G46530 51.4 6.8e-165 577.8
Cme01g00630 . 1 326 B3 DNA Binding Superfamily AT2G46530 73.7 1.2e-132 470.7
Cme08g00111 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 51.6 7.1e-98 355.1
Cme12g01152 CCT 1 368 B3 DNA Binding Superfamily AT2G46530 50.1 7.4e-95 345.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT2G46530 50.5 1.1e-74 278.1
Cme07g01536 . 55 670 B3 DNA Binding Superfamily AT3G61830 51.4 2.2e-159 559.3
Cme09g01853 . 54 678 B3 DNA Binding Superfamily AT3G61830 51.3 2.3e-156 549.3
Cme10g01685 . 53 644 B3 DNA Binding Superfamily AT3G61830 51.2 5.3e-153 538.1
Cme01g00630 . 1 324 B3 DNA Binding Superfamily AT3G61830 72.1 2.2e-135 479.6
Cme08g00111 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 53.2 7.2e-86 315.1
Cme12g01152 CCT 51 364 B3 DNA Binding Superfamily AT3G61830 51.4 4.4e-83 305.8
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT3G61830 51.1 2.0e-75 280.4
Cme09g01853 . 20 672 B3 DNA Binding Superfamily AT4G23980 57.7 6.2e-198 687.6
Cme07g01536 . 1 667 B3 DNA Binding Superfamily AT4G23980 56.4 3.2e-194 675.2
Cme10g01685 . 16 644 B3 DNA Binding Superfamily AT4G23980 52.8 1.0e-168 590.5
Cme01g00630 . 2 456 B3 DNA Binding Superfamily AT4G23980 57.4 8.8e-136 481.1
Cme04g00486 . 1 281 B3 DNA Binding Superfamily AT4G23980 53.3 2.5e-82 303.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34310 51.4 2.1e-91 333.6
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34390 53.7 5.4e-95 345.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G34410 52.0 6.1e-94 342.0
Cme01g00630 . 2 310 B3 DNA Binding Superfamily AT1G35240 53.5 5.6e-92 335.5
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35520 51.8 2.8e-91 333.2
Cme01g00630 . 2 320 B3 DNA Binding Superfamily AT1G35540 51.7 2.1e-94 343.6
Cme07g01536 . 25 229 B3 DNA Binding Superfamily AT1G43950 55.8 6.8e-59 224.2
Cme09g01853 . 24 228 B3 DNA Binding Superfamily AT1G43950 55.8 5.8e-58 221.1
Cme10g01685 . 19 227 B3 DNA Binding Superfamily AT1G43950 51.2 3.7e-57 218.4
Cme02g02113 . 41 246 B3 DNA Binding Superfamily AT1G43950 52.9 6.4e-57 217.6
Cme01g00630 . 2 160 B3 DNA Binding Superfamily AT1G43950 54.7 1.4e-40 163.3
Cme11g01803 . 3 688 B3 DNA Binding Superfamily AT2G28350 58.2 1.5e-210 729.6
Cme08g02302 . 13 696 B3 DNA Binding Superfamily AT2G28350 54.9 3.2e-197 685.3
Cme03g01275 . 13 686 B3 DNA Binding Superfamily AT2G28350 50.6 1.0e-171 600.5
Cme08g02302 . 14 696 B3 DNA Binding Superfamily AT4G30080 58.5 4.1e-216 748.0
Cme11g01803 . 4 688 B3 DNA Binding Superfamily AT4G30080 57.3 3.0e-211 731.9
Cme03g01275 . 8 689 B3 DNA Binding Superfamily AT4G30080 54.8 1.0e-198 690.3
Cme09g01901 . 52 166 B3 DNA Binding Superfamily AT1G01030 84.5 1.3e-53 207.2
Cme07g01632 . 62 171 B3 DNA Binding Superfamily AT1G01030 79.5 2.1e-48 189.9
Cme10g00289 . 179 287 B3 DNA Binding Superfamily AT1G01030 67.0 1.0e-37 154.5
Cme10g00289 . 16 344 B3 DNA Binding Superfamily AT1G25560 62.8 3.4e-108 388.7
Cme09g00779 . 34 307 B3 DNA Binding Superfamily AT1G25560 62.3 5.4e-90 328.2
Cme04g02367 . 41 159 B3 DNA Binding Superfamily AT1G25560 65.5 9.7e-39 157.9
Cme09g01901 . 53 161 B3 DNA Binding Superfamily AT1G25560 66.1 5.3e-37 152.1
Cme11g02307 . 96 211 B3 DNA Binding Superfamily AT1G25560 62.1 7.0e-37 151.8
Cme01g00041 . 1 217 B3 DNA Binding Superfamily AT3G19184 64.6 2.3e-67 252.7
Cme03g02021 . 6 228 B3 DNA Binding Superfamily AT3G19184 55.1 1.3e-54 210.3
Cme03g02019 . 4 227 B3 DNA Binding Superfamily AT3G19184 53.4 2.5e-50 196.1
Cme03g02021 . 51 226 B3 DNA Binding Superfamily AT5G42700 57.9 3.0e-52 201.8
Cme03g02019 . 51 229 B3 DNA Binding Superfamily AT5G42700 54.7 2.9e-47 185.3
Cme01g00041 . 62 217 B3 DNA Binding Superfamily AT5G42700 56.3 2.2e-42 169.1
Cme11g00493 . 16 380 B3 DNA Binding Superfamily AT3G18990 57.8 2.0e-103 372.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001814 1 2 2 2 3 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 2 2 2 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42321 PF02309 AUX_IAA 3.10E-07 CL0072 Cme TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g01152 Cme_Chr12 FPKM 0.731082 0.574462 0.393257 0.334816 6.534312 6.831343 5.902744 2.148771 1.775596 2.305768