Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01159 ATGCAGATTAAACGTGAGATATCAACGATGAAATTAATTAGGCATCCAAATGTCATCCGTATGATTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTCGTCACTGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAACAAGAAAGTATTTTCAGCAACTTATTAATGCTGTGGATTATTGTCATAGCAGAGGCGTTTTTCACAGAGATCTAAAGCCAGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTGCCTCAGCAAGTTCGGGAAGATGGGTTACTGCACACAACATGTGGGACACCAAATTATGTTGCTCCAGAGGTGATCAATAATAAAGGCTACGATGGGGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATCTACCCTTTGAAGATTCCAACCTGGTTGCGTTGTATAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACAAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACTATTCCAGAGGTCATTGAGAACGAATGGTTTAGAAAAGGTTATAAGCCGCCCACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGATGCTATCTTCAATGAAACAGGGGATTCGGGTAGTCTTGTCGTGGAAAGGAAAGAGGAAGGATCTAAATCCCCTCTTACGATGAATGCGTTCGAGCTTATATCTAAATCTCAAGGACTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGGATTGTTAAACGGGAAACAAGATTCACATCCAATCGACCTGCAAAAGAGATCCTTTCTAAAATTGAGGAAACTGCAACGCCTTTGGGTTTTGATGTGAAGAAAAATAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTGGCAACAGAGATTTATGAGGTTGCTCCGTCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAGTCTCAAGACTGGGCTGAAAGATATTGTCTGGAAACACGAAGAGGATCCGGATGAAGGAGAGACTGGTGCTAGTGTCTCACAGTCGTCGAGGTAA 1200 41.0 MQIKREISTMKLIRHPNVIRMIEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDETRKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKSPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETATPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKSLKTGLKDIVWKHEEDPDEGETGASVSQSSR 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 19714735 19723230 - MELO3C002766.2.1 Cme12g01159 344376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01159 399 ProSiteProfiles NAF domain profile. 255 279 IPR018451 GO:0007165
Cme12g01159 399 SUPERFAMILY Protein kinase-like (PK-like) 2 224 IPR011009 -
Cme12g01159 399 Gene3D Kinase associated domain 1, KA1 254 380 - -
Cme12g01159 399 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 2 386 - -
Cme12g01159 399 Pfam NAF domain 257 317 IPR004041 GO:0007165
Cme12g01159 399 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01159 399 PANTHER SERINE/THREONINE KINASE 2 386 - -
Cme12g01159 399 Gene3D Phosphorylase Kinase; domain 1 1 42 - -
Cme12g01159 399 CDD CIPK_C 261 376 - -
Cme12g01159 399 Gene3D Transferase(Phosphotransferase) domain 1 43 220 - -
Cme12g01159 399 Pfam Protein kinase domain 2 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01159 399 SMART serkin_6 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01159 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 77 89 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00116 Cme12g01159 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme05g00043 Cme-Chr5:306287 Cme12g01159 Cme-Chr12:19714735 0 dispersed
Cme06g00059 Cme-Chr6:390114 Cme12g01159 Cme-Chr12:19714735 1.40E-175 dispersed
Cme12g01159 Cme-Chr12:19714735 Cme12g01283 Cme-Chr12:20898876 5.66E-155 dispersed
Cme12g01159 Cme-Chr12:19714735 Cme08g00116 Cme-Chr8:871731 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65305 PF00069 Pkinase 7.90E-63 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01159 - - csv:101222334 783.867