Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01212 ATGGCAGCCTCAACCATGGCTCTATCCTCGCCCTCTCTCGCCGGAAAAGCGGTGAAACTTACGCCTTCTTCCCCCGAGCTTTTCGGCAACAGCAGAGTCAACATGAGGAAATCTGCCGCCAAGTCAGTTTCTTCTGGAAGCCCGTGGTACGGACCTGACCGTGTTAAGTATTTGGGCCCATTCTCCGGTGAGCCTCCATCCTATCTTACTGGAGAATTCCCCGGTGACTATGGTTGGGATACTGCTGGACTTTCTGCTGATCCTGAGACTTTTGCCAAGAACCGTGAACTTGAAGTCATCCACTCTAGGTGGGCTATGCTTGGAGCATTGGGTTGCGTGTTCCCAGAGCTTCTTTCCCGTAATGGTGTGAAGTTCGGAGAAGCAGTATGGTTCAAAGCCGGTTCTCAGATTTTCAGCGAAGGTGGACTCGACTACTTAGGAAACCCAAGTTTGATCCACGCCCAAAGCATTCTAGCCATTTGGGCCTCCCAAGTTGTTCTCATGGGGGCCGTCGAGGGATACCGTATTGCCGGTGGTCCACTAGGGGAGGTGACCGATCCCATCTACCCAGGCGGTAGCTTTGACCCATTGGGACTTGCAGATGACCCGGAAGCCTTTGCAGAGCTCAAAGTGAAGGAGCTGAAGAATGGACGATTGGCTATGTTCTCCATGTTTGGATTCTTCGTTCAAGCTATCGTCACCGGAAAGGGTCCACTAGAGAATCTTGCTGACCATCTTGCTGACCCAGTCAACAACAATGCTTGGGCTTACGCTACCAACTTTGTTCCTGGAAAATGA 798 51.75 MAASTMALSSPSLAGKAVKLTPSSPELFGNSRVNMRKSAAKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIAGGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20231593 20233086 + MELO3C002727.2.1 Cme12g01212 344429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01212 265 Pfam Chlorophyll A-B binding protein 65 231 IPR022796 -
Cme12g01212 265 Gene3D Chlorophyll a/b binding protein domain 56 258 - -
Cme12g01212 265 SUPERFAMILY Chlorophyll a-b binding protein 48 262 - -
Cme12g01212 265 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 265 IPR001344 GO:0009765|GO:0016020
Cme12g01212 265 PANTHER CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTIC 1 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00161 Cme-Chr8:1126903 Cme12g01212 Cme-Chr12:20231593 0 dispersed
Cme09g00132 Cme-Chr9:974790 Cme12g01212 Cme-Chr12:20231593 1.09E-67 dispersed
Cme11g01575 Cme-Chr11:23355951 Cme12g01212 Cme-Chr12:20231593 0 dispersed
Cme12g01212 Cme-Chr12:20231593 Cme08g00160 Cme-Chr8:1124451 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01212 K08912 - csv:101211276 531.561