Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01221 ATGTGGCTGGTGGTTCTAGTGATATATTCAGCTTGGATTTGTCCATTCGAATTCGCATTTCTTCCTTACAAGCAAAATGCTCTATTCATTATAGATCACTTTGTCAATGCCTTCTTTGCCATCGATATCATTTTAACTTTCTTCGTCGCTTATCTCGATTCTCAATCCTATCTTCTCGTCGACCACCCTAAAAAAATTGCACTTAGGTATTTATCAACCTGGTTTATATTTGACGTTTGTTCTACTGCTCCATTACAATCAATAAGTTTCTTATTCACAAATCAAACCGGAGAAGTTGGGTTTAAGCTTCTCAACATGCTCCGGCTATGGCGACTCCGACGGGTCAGCTCTCTTTTCGCAAGGTTAGAAAAGGACATAAGGTTCAATTATTTCTGGACCCGTTGCACAAAGCTCATTTCGGTTACATTATTTGCAGTACACTGTGCTGGGTGCTTTAATTATGTGATAGCAGATAAGTATCCAGATTCAAAACAAACATGGATTGGTGCTGTGAACCCTAATTTCAAAGAAGAAAGTTTATGGAACCTTTACATTACTTCGATTTATTGGTCTATTACTACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTAGAGAAATGCTCTTTGATATCTTTTATATGCTCTTTAACCTGGGCTTCACTTCTTATCTCATCGGTAACATGACCAATCTCGTCGTTCATTGGACTAGTCGCACTCGAAACTTCAGAGATTCGGTGCAAGCTGCGACCGAATTTGCATTGAGAAACCAGTTACCAGAGCGAATACAAGATCAGATGTTGTCACACATATGTCTGAAGTTTAGAACTGAGGGGCTAAAGCAACAAGACACATTGAATGAGCTTCCGAAAGCCATTAGAGCCTCCATAGCTCACTATCTCTTCTATCCTATTGTTCAAAAGGCATGCCTTTTCGAAGGAGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCTGAGTACTTCCCACCAAAGGAAGATATTATCCTTCAAAATGAGGCTCAAACAGATCTCTATATATTGGTCTCAGGCAGTGTGGATCTAATATTATCCCATGTTGATGGCCACGATGATCATGATCAAGTCATAGGAAGAGGAACAAGTGGAGATATGTTTGGAGAATATGGAGTTTTATGTCAAAAGCCACAACCTTTCACAATTAGAACCACAAAGCTTTCTCAAATACTAAGGCTCAAGAGAACTTCTTTATTGTATATTATTCAATCAAATACAGAAGATGGGAATATTATAATGAACAACTTTTTCATGAAAATGAAGGAATATGAAAGAATGTTGGGGAATATTTGGTGTGATAATGGAGAACTAAAGAAACTTGAAAATCATTATTCTAAAGAGGATGATGATGAAAATTATAATATGGGAATTAATGACAATAATTTAGATGAACATAGAATTGAGTTTGATCATGAAGAGGTTGAAGGGGGTGAAAAGGATATAATTAAATTTTCTCATAACAACAAATTATTACAAGGGAGGAATATTAATAATAATGGAGGTCAAACTTCAGATATTATAAGTTCTTCATTAGAAAATTTGCCAACAATTAGCAGCTCTAATTACTTGAATTTTTCTAAGCAAATCAAGAAGAGGGTTACTGTATATATGCAACCTCAAGATAGAAGCTGCAAGGTCAAAAGTCAACTTGGAAAGTTGATACTTCTCCCAGATTCGATCGAAGAGCTCTGCAAAATCGCTGGTGAAAAGTTTGGAGGGCAAATAATGCCTACAAAAGTGATGAGTGCAGATAATGCAGAAATTGATGATATAAATGTGATTCGTGATGGTGACCATTTGTTTCTTCTTTATAATCATATTCAAAATTGTGGTCTCCAATGA 1896 36.71 MWLVVLVIYSAWICPFEFAFLPYKQNALFIIDHFVNAFFAIDIILTFFVAYLDSQSYLLVDHPKKIALRYLSTWFIFDVCSTAPLQSISFLFTNQTGEVGFKLLNMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFNYVIADKYPDSKQTWIGAVNPNFKEESLWNLYITSIYWSITTLTTTGYGDLHAENPREMLFDIFYMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDSVQAATEFALRNQLPERIQDQMLSHICLKFRTEGLKQQDTLNELPKAIRASIAHYLFYPIVQKACLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLILSHVDGHDDHDQVIGRGTSGDMFGEYGVLCQKPQPFTIRTTKLSQILRLKRTSLLYIIQSNTEDGNIIMNNFFMKMKEYERMLGNIWCDNGELKKLENHYSKEDDDENYNMGINDNNLDEHRIEFDHEEVEGGEKDIIKFSHNNKLLQGRNINNNGGQTSDIISSSLENLPTISSSNYLNFSKQIKKRVTVYMQPQDRSCKVKSQLGKLILLPDSIEELCKIAGEKFGGQIMPTKVMSADNAEIDDINVIRDGDHLFLLYNHIQNCGLQ 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20340316 20346669 - MELO3C002718.2.1 Cme12g01221 344438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01221 631 Pfam Cyclic nucleotide-binding domain 334 423 IPR000595 -
Cme12g01221 631 PANTHER POTASSIUM CHANNEL KAT1 1 621 - -
Cme12g01221 631 Gene3D - 1 237 - -
Cme12g01221 631 PANTHER POTASSIUM CHANNEL AKT1 1 621 IPR045319 GO:0005249|GO:0006813
Cme12g01221 631 SUPERFAMILY cAMP-binding domain-like 241 434 IPR018490 -
Cme12g01221 631 SUPERFAMILY Voltage-gated potassium channels 3 237 - -
Cme12g01221 631 CDD CAP_ED 314 431 IPR000595 -
Cme12g01221 631 Gene3D Jelly Rolls 307 449 IPR014710 -
Cme12g01221 631 PRINTS EAG/ELK/ERG potassium channel family signature 184 201 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme12g01221 631 PRINTS EAG/ELK/ERG potassium channel family signature 228 237 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme12g01221 631 PRINTS EAG/ELK/ERG potassium channel family signature 210 221 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme12g01221 631 PRINTS EAG/ELK/ERG potassium channel family signature 43 52 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme12g01221 631 PRINTS EAG/ELK/ERG potassium channel family signature 9 16 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme12g01221 631 PRINTS EAG/ELK/ERG potassium channel family signature 32 42 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cme12g01221 631 SMART cnmp_10 314 435 IPR000595 -
Cme12g01221 631 Pfam Ion transport protein 2 243 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cme12g01221 631 ProSiteProfiles cAMP/cGMP binding motif profile. 314 437 IPR000595 -
Cme12g01221 631 Gene3D Helix hairpin bin 238 304 - -
Cme12g01221 631 ProSiteProfiles KHA domain profile. 550 631 IPR021789 -
Cme12g01221 631 Pfam KHA, dimerisation domain of potassium ion channel 549 620 IPR021789 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00388 Cme-Chr4:3111404 Cme12g01221 Cme-Chr12:20340316 1.93E-107 dispersed
Cme04g00389 Cme-Chr4:3118886 Cme12g01221 Cme-Chr12:20340316 1.32E-37 dispersed
Cme06g01249 Cme-Chr6:10104936 Cme12g01221 Cme-Chr12:20340316 7.13E-08 dispersed
Cme06g01425 Cme-Chr6:13129821 Cme12g01221 Cme-Chr12:20340316 1.29E-29 dispersed
Cme09g00898 Cme-Chr9:12374775 Cme12g01221 Cme-Chr12:20340316 1.00E-84 dispersed
Cme12g01221 Cme-Chr12:20340316 Cme05g01491 Cme-Chr5:24333092 1.24E-14 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01221 K21867 - csv:101215858 1167.91