Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01234 ATGGACAAACTGAATCGGAGTTCCGATAAAGCAATGGCGGCTTCTTCTTCTGCCGACAGCAATACTAGGGCTCCTCCTCCTACTTCCACTAGTGCCGACTACAGACTTACTGCACTTGTTCAATACAATGTTGATGCTGGCCTTTTGAACAAGTTTGAGCTCTCCGATGCTTCTGGTGAGTCTTTTAACTATTCAAAATCAGTTCTTGAAGCTCCTGTCTCTGTTCCTGAAGAACAAATTACTGCCTATTTGTCTAAGATTCAAAGGGGTGGTTTGGTTCAACCATTCGGTTGTTTGCTTGCTATTGAAGAATCTAGTTTTAAGATTATTAGTTTTAGTGAGAATTGTTTTGAATTACTGGGCCTTAATGATGATCAATTTGGGTCGGCACAGGGGAAGAAGGGTCTGATTGGGGTTGATATGAGAGCTCTGTTAACGCCTTCCTCTGGTGCTTCTTTGGCCAAAGCGGCTTCTTCCAGGGAGATTTCTCTGTTGAACCCTGTTTGGGTTTATTCTAGGACTACCCAGAAGCCGTTTTATGCTATATTGCATAGAATTGATGTGGGGGTTGTTATTGATTTGGAGCCTGCACGGTCTGTTGATCCTGCATTGTCACTTGCTGGTGCTGTACAGTCACAGAAACTCGCGGTTAGAGCCATTTCCAGGTTGCAGGCTCTACCTAGTGGTGATATTGGTGTTCTTTGTGATACGGTTGTCGAAGATATTCAAAAGCTTACAGGGTATGATAGAGTGATGGTCTATAAGTTCCATGATGACGAACATGGTGAAGTAGTGTCAGAAATCAGAAGGTCTGACTTAGAGCCATACCTTGGTTTGCATTATCCTGCCATTGATATACCTCAAGCAGCACGTTTTTTGTTCAAACAGAACCGCATTAGGATGATTTGTGATTGCAATGCGAAGCTGGTGCCGATCATTCAAAGTGATGATCTAAAGCAGCCTCTTTGTTTGGTAAATTCAACACTAAGAGCACCACATAGCTGTCACTTGCAATACATGTCAAATATGAATACCTTAGCTTCATTAGTAATGGCAATAGTCATAAACAGTGATGAATCACCAACAAAGCTATGGGGTCTGGTAGTGTGTCACCATACTTCTCCTCGATATGTCCCTTTCCCACTTCGCTATGCCTGCGAGTTTCTCATGCAGGCGTTCAGGCTGCAGCTTTACATGGAACTTCAATTGGCATCACAATTAATAGAGAAAAAGATCCTCAAGACACAAACTTTACTTTGTGACATGCTTCTCCGAGGCTCCCCATGTGCATTGCTAACTCGGTCACCTAGTATAATGGATCTCGTGAAGTGTGATGGTGCTGCATTGTACTATAATGGGGCATGCTATTTCTTAGGTATAACTCCAACTGAAGCACAAGTCAAAGATCTTGCAGAGTGGATACTCAATAATCATGGGGATTCTACAGGGCTGAGCACAGATAGTTTGGCTGATGCTGGCTACCCTGAAGCTGTTTCACTAGCTGATGCAGTGTGTGGTATGGCAGCTGCAAGAATCGCTTCAAAGGATTTCTTATTCTGGTTCAGGTCCCATGTTGCAAAGGAAATTCAATGGGGAGGAGCCAAGCATCATCCAGACGATAAGGACGATAGTGGAAGAATGCACCCGAGATCATCGTTTAAAGCATTTCTTGAAGTTGCAAAGAGTAGAAGTTTCTCTTGGGAAGTTCAAGAAATAAATGCCATTCACTCATTGCAGCTTATAATGAGGGAGTCTTTTCCAAACACCAGGGACAGTAATTCAAAGGCAGAAAGTTCTTCCCAGTTGAGTGATGCTGAGATCCGGAATATCAATGAACTCAGTTCAGTAGCTTGTGAAATGGTTAGGGTGATTGAAACAGCAACCATACCAATTTTTGGGGTTGACTCAACTGGTTTGATCAATGGATGGAATGCTAAAATTTCTGAACTTGTGGGATTACATACTGGAGAAGCTCTGGGGAAATCTCTGGTTAATGAAATTGTTCATGAAGATTCACGTGGAACTGCAGAAGATTTACTTTCCTGTGCTCTGCAAGGTAAGGAAGACAAAAATGTGGAGTTGAAACTGAGAAGTTTTCGAACTGCTAAAGAGCACTCTAACGTGTATATTGTGGTTAACGCTTGCACAAGTAGAGATTACACAGACAAAGTTGTTGGAGTTTGCTTTGTTGGGCAAGATCTTACAACCGAGAAGGCTGTGATGGATAAATTTATCCGTTTGCAGGGAGATTATAAGACTATTATTGAAAGTCTGTGCCCATTGATTCCTCCAATGTTTGTTTCCGATGAGAATGGTTACTGCTATGAATGGACTGCAGCCATGGAAAAGCTTACTGGTTGGAGGAAAAATGAAGTTGTAGGAAAAATGCTAGCTGGGGAGATCTTTGGGAATTTCTGTAGATTGAAAGGTCTAGACACCCTCACTAGGTTCATGATTCTTTTATATCAAGGTATTAGTGGTCAAGTAACCGAAAAGTTTCCATTAGGATTTTTCAATAAGGATGGGAATTATGTAGATGTGTTGTTAACATCGAACAAGAGAACCGATGCCGAAGGAAAGGCCATTGGTTGTATCTGCTTCCTGCAAATTGTTGAGCCCAACTTACATGGGGTCTTGGAAGGACTTGGGACGGGTGATAGAGAGGCTGTTCTGCAGCATAAGGAGTTGAGCTTCTTAAAGCACGAGATGAAAAATCCTTTAAATGGCCTCAGATTTACGCATGAACTCCTTGTAAACTCTGGCGTTACTGAAAACCAGAAACTTTTCCTTGATACTAGTGATGCATGTGAGAGACAAATCATGACAATCATAGAGGATATGGACTTCAGAAGATTAGAAGAGGGAAAGTCATTCCAAATAGACGTCGAGTCTATATTGCATGACGCGCAAACAATTATGCCTCACCTGCGGGAGAAGTTGCTGTTCCACAAAGTGCACATTATCTTAGCCTCGATTGGACCTGAATTATCAATGATCTTCCAAGTAGAGATCAACAGACAAGACTTTCTCCTCGGGAGTGTTCTGGATGCCATTATCTGTCAAATCATGATCGTTGTCCGAGAGAGGAACATTCAACTTTTTCATGAAATTCCAGAAGAAATCAAAACGTTAACTCTTTGTGGCGACCAAATTAAGCTTCAGATGGTTTTATCAGATTTCTTACTTAACATAGTGCAGTACGCGCCTGTTCAGGATGGTTGGGTTGAAATCAAAATTTCTTCTGGTTTGAAGCTTATACAAGATGGAAATGAGCATATTCACTTGCAGATCAGAATGTCACATCCAGGTCAAGGTTTGCCTCATGAACTAATCCAAGATATGGTTGGAGGAGGACAACAGTGGACTTCAGAACAAGGCTTGGCCCTAAACCTGTCACGTAGACTTCTTAATAAATTGAACGGTAATGTCCGCTATGTTAGAGAGCAAACCAAATGCTACTTCCTCATCGACCTCGAACTCAAGTTAAGGCGCTCGAGGGGGTTAATGGAAGCTATTACGGGCCAAAGGACTTGA 3534 42.13 MDKLNRSSDKAMAASSSADSNTRAPPPTSTSADYRLTALVQYNVDAGLLNKFELSDASGESFNYSKSVLEAPVSVPEEQITAYLSKIQRGGLVQPFGCLLAIEESSFKIISFSENCFELLGLNDDQFGSAQGKKGLIGVDMRALLTPSSGASLAKAASSREISLLNPVWVYSRTTQKPFYAILHRIDVGVVIDLEPARSVDPALSLAGAVQSQKLAVRAISRLQALPSGDIGVLCDTVVEDIQKLTGYDRVMVYKFHDDEHGEVVSEIRRSDLEPYLGLHYPAIDIPQAARFLFKQNRIRMICDCNAKLVPIIQSDDLKQPLCLVNSTLRAPHSCHLQYMSNMNTLASLVMAIVINSDESPTKLWGLVVCHHTSPRYVPFPLRYACEFLMQAFRLQLYMELQLASQLIEKKILKTQTLLCDMLLRGSPCALLTRSPSIMDLVKCDGAALYYNGACYFLGITPTEAQVKDLAEWILNNHGDSTGLSTDSLADAGYPEAVSLADAVCGMAAARIASKDFLFWFRSHVAKEIQWGGAKHHPDDKDDSGRMHPRSSFKAFLEVAKSRSFSWEVQEINAIHSLQLIMRESFPNTRDSNSKAESSSQLSDAEIRNINELSSVACEMVRVIETATIPIFGVDSTGLINGWNAKISELVGLHTGEALGKSLVNEIVHEDSRGTAEDLLSCALQGKEDKNVELKLRSFRTAKEHSNVYIVVNACTSRDYTDKVVGVCFVGQDLTTEKAVMDKFIRLQGDYKTIIESLCPLIPPMFVSDENGYCYEWTAAMEKLTGWRKNEVVGKMLAGEIFGNFCRLKGLDTLTRFMILLYQGISGQVTEKFPLGFFNKDGNYVDVLLTSNKRTDAEGKAIGCICFLQIVEPNLHGVLEGLGTGDREAVLQHKELSFLKHEMKNPLNGLRFTHELLVNSGVTENQKLFLDTSDACERQIMTIIEDMDFRRLEEGKSFQIDVESILHDAQTIMPHLREKLLFHKVHIILASIGPELSMIFQVEINRQDFLLGSVLDAIICQIMIVVRERNIQLFHEIPEEIKTLTLCGDQIKLQMVLSDFLLNIVQYAPVQDGWVEIKISSGLKLIQDGNEHIHLQIRMSHPGQGLPHELIQDMVGGGQQWTSEQGLALNLSRRLLNKLNGNVRYVREQTKCYFLIDLELKLRRSRGLMEAITGQRT 1177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20494555 20501916 + MELO3C002705.2.1 Cme12g01234 344451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01234 1177 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1048 1158 IPR003594 -
Cme12g01234 1177 SMART gaf_1 230 411 IPR003018 GO:0005515
Cme12g01234 1177 CDD HATPase_Phy-like 1048 1160 IPR044767 -
Cme12g01234 1177 Pfam PAS fold 82 197 IPR013654 GO:0006355
Cme12g01234 1177 Pfam PAS fold 750 869 IPR013767 GO:0006355
Cme12g01234 1177 Pfam PAS fold 619 733 IPR013767 GO:0006355
Cme12g01234 1177 SUPERFAMILY GAF domain-like 210 397 - -
Cme12g01234 1177 Gene3D - 1001 1165 IPR036890 -
Cme12g01234 1177 ProSiteProfiles PAC domain profile. 690 746 IPR000700 -
Cme12g01234 1177 Gene3D PAS domain 86 333 - -
Cme12g01234 1177 Pfam His Kinase A (phospho-acceptor) domain 896 955 IPR003661 GO:0000155|GO:0007165
Cme12g01234 1177 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 868 IPR035965 -
Cme12g01234 1177 CDD PAS 627 734 IPR000014 -
Cme12g01234 1177 SUPERFAMILY PYP-like sensor domain (PAS domain) 87 198 IPR035965 -
Cme12g01234 1177 PANTHER TWO-COMPONENT HISTIDINE KINASE 1007 1166 - -
Cme12g01234 1177 PIRSF Phytochrome_conventional 983 1169 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cme12g01234 1177 PIRSF Phytochrome_conventional 12 974 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Cme12g01234 1177 CDD HisKA 896 947 IPR003661 GO:0000155|GO:0007165
Cme12g01234 1177 SMART HisKA_10 891 955 IPR003661 GO:0000155|GO:0007165
Cme12g01234 1177 TIGRFAM sensory_box: PAS domain S-box protein 623 738 IPR000014 -
Cme12g01234 1177 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 230 391 IPR016132 -
Cme12g01234 1177 ProSiteProfiles PAS repeat profile. 747 802 IPR000014 -
Cme12g01234 1177 MobiDBLite consensus disorder prediction 9 30 - -
Cme12g01234 1177 Gene3D PAS domain 764 874 - -
Cme12g01234 1177 ProSiteProfiles PAS repeat profile. 616 687 IPR000014 -
Cme12g01234 1177 Gene3D - 211 562 IPR029016 -
Cme12g01234 1177 MobiDBLite consensus disorder prediction 1 30 - -
Cme12g01234 1177 CDD PAS 761 869 IPR000014 -
Cme12g01234 1177 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 730 IPR035965 -
Cme12g01234 1177 PANTHER PHYTOCHROME E 36 967 - -
Cme12g01234 1177 ProSiteProfiles Histidine kinase domain profile. 898 1162 IPR005467 -
Cme12g01234 1177 Pfam Phytochrome region 414 588 IPR013515 GO:0006355|GO:0009584
Cme12g01234 1177 PANTHER PHYTOCHROME E 1007 1166 - -
Cme12g01234 1177 Pfam GAF domain 230 401 IPR003018 GO:0005515
Cme12g01234 1177 SMART HKATPase_4 1048 1160 IPR003594 -
Cme12g01234 1177 Gene3D - 406 579 IPR043150 -
Cme12g01234 1177 PRINTS Phytochrome signature 330 351 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 245 264 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 145 167 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Cme12g01234 1177 PANTHER TWO-COMPONENT HISTIDINE KINASE 36 967 - -
Cme12g01234 1177 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1004 1151 IPR036890 -
Cme12g01234 1177 ProSitePatterns Phytochrome chromophore attachment site signature. 330 339 IPR013516 -
Cme12g01234 1177 SUPERFAMILY GAF domain-like 409 586 - -
Cme12g01234 1177 SMART pas_2 618 685 IPR000014 -
Cme12g01234 1177 SMART pas_2 749 819 IPR000014 -
Cme12g01234 1177 Gene3D PAS domain 617 739 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g00790 Cme-Chr6:5236998 Cme12g01234 Cme-Chr12:20494555 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01234 K12123 - csv:101214900 2090.08