Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01248 ATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGATTAGAGAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACAGATCTTCTTCTCTCAATGATCAAGAATCACGAGATGCTTGCAGTCTGGGAGAAGTCAATAGTTATGATCTCTTCACAAATGCTGGTGATATTTGTGGGTCGTTTAACGAGGAAGATGTCTTAGAAGGGATATCAGTGGTAAAAGATAGCTTTGATGGATTCCAAAGGCCGGAAGGGAGGACTTATAAGCAACGTCTTCTTGTTGTAGCGAACAGGTTGCCTGTGTCTGCTGTTAGAAAAGGGAAGGAGACATGGCATCTCGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGGGTGAATGTACCTGATGAAGCAGGACAAAGAGCCCTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGTCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCACGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAGCACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAGATACATAGAACTCTACCATCTCGTTCAGAGCTGCTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGCGCCTGCACCCGTATTCTTGGATTGGAAGGCACACCTGAAGGAGTAGAGGATCAAGGAAAACTCACTCACATAGCTGCTTTTCCTATTGGAATAGATTCTGAGCGATTCATACGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATAAAAGAACTACAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGAGGAATGGAGCATTTAAAGACCTTGTCTTCTTTGATGTAACAGATCAAAAGCTAACGAGTCAGGTTCATGAGATCGTCGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTAGATCGTTCACTCGATTTCCATGCATTATGTGCTTTATATGCTGTCACCGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGCAGCACAGTCATTAGGTGCCGGAGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGGATATGCCAGCTGACGAAAGAGAAAGACGTCACCATCATAATTTTATGCATGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATTCCACCTTTACTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGATCGCATAATCGATTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATGCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAGATTAAATCCAGCTGTAAAAGAGCCCTTGAAGAAGCTTTGCGATGACAAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGACGATAATTTCGGTGACTACAACATGTGGTTGGCAGCAGAAAACGGGATGTTCTTACGTCCTACAAAGGGTGAATGGATGACGACAATGCCTGAAAATTTACATATGGATTGGGTTGAGAGTGTTAAGCATGTGTTCGAGTATTTTACTGAAAGAACTCCCAGATCCCATTTCGAGCTTCGTGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACCGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGCTCAGTTGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACGTTTTTCGAACCCGACCTTCCTACCGAAGTGCCAGCTGCAGTAGCAAGAACAACAGTCACCAATCCTTTTGGAGGAGTACCAGTGCCAAAGATCCCAAACACTGTAGTCTCACCAAGCAGGTCAGCACGTCTCAAGAAACAACGCTCCCTTTCCATTTTAGAAAGAAAAGCAAATAGCCATGGGAGTGCAGTGTTTTGGAGGCCTGTAGTTCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTCGATCTCAAGGGCGACAATTACTTCTCCTGTGCTGTGGGGCGGAAAAGATCCAATGCCAGATATCTTATTGGATCATCGGATGATGTTGTCACACTTGTGAAGGAGTTGTCAGAATGTTCAGAGTGTCAAATTTGA 2814 42.93 MLSNNHNNSPPTPRTRLERLLRERELRRSNRSSSLNDQESRDACSLGEVNSYDLFTNAGDICGSFNEEDVLEGISVVKDSFDGFQRPEGRTYKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNSTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTHIAAFPIGIDSERFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPERNGAFKDLVFFDVTDQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGAAQSLGAGAILVNPWNITEVAASIGYALDMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIREAVNCYSRSHNRLGFNATLTEAVDALGRRYGQIRDMDLRLNPAVKEPLKKLCDDKNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPTEVPAAVARTTVTNPFGGVPVPKIPNTVVSPSRSARLKKQRSLSILERKANSHGSAVFWRPVVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLIGSSDDVVTLVKELSECSECQI 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20614503 20622636 - MELO3C002694.2.1 Cme12g01248 344465

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01248 937 Gene3D - 621 810 IPR023214 -
Cme12g01248 937 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 568 - -
Cme12g01248 937 CDD GT20_TPS 95 565 IPR001830 GO:0003824|GO:0005992
Cme12g01248 937 Gene3D - 687 767 - -
Cme12g01248 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 49 929 - -
Cme12g01248 937 Gene3D Glycogen Phosphorylase B; 88 341 - -
Cme12g01248 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 49 929 IPR001830 GO:0003824|GO:0005992
Cme12g01248 937 SUPERFAMILY HAD-like 621 923 IPR036412 -
Cme12g01248 937 CDD HAD_TPP 598 815 - -
Cme12g01248 937 Pfam Glycosyltransferase family 20 95 565 IPR001830 GO:0003824|GO:0005992
Cme12g01248 937 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 565 IPR012766 GO:0003825|GO:0005992
Cme12g01248 937 Pfam Trehalose-phosphatase 621 827 IPR003337 GO:0003824|GO:0005992
Cme12g01248 937 Gene3D Glycogen Phosphorylase B; 342 549 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01248 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101213690 1724.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00497 Cme-Chr7:4052377 Cme12g01248 Cme-Chr12:20614503 0 dispersed
Cme08g00207 Cme-Chr8:1392770 Cme12g01248 Cme-Chr12:20614503 2.76E-128 dispersed
Cme12g01248 Cme-Chr12:20614503 Cme10g00508 Cme-Chr10:3271116 1.32E-131 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi10g299 Blo01g00884 . . . . . . Bma01g01475 . Cmo18g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy12g00042 . . . . . . . . . Sed08g2711 . . . Cma18g00443 . Car18g00415 . . Bhi08g02131 Tan05g2550 Cmetu12g0972 Lac10g1001 . . . Cla03g00681 Cam03g0713 Cec03g0686 Cco03g0723 Clacu03g0728 Cmu03g1320 Cre03g0996 Lsi02g00848 Csa01g02281 . Cme12g01248
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cme09g01841 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.9 1.9e-191 666.0
Cme01g00311 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1372.8
Cme08g00207 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1355.1
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1127.9
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1095.5
Cme02g01956 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 5.4e-306 1047.0
Cme07g00497 . 85 693 Trehalose Biosynthesis Gene Families AT1G16980 62.9 1.2e-231 799.7
Cme12g01248 . 88 698 Trehalose Biosynthesis Gene Families AT1G16980 61.1 1.5e-226 782.7
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.2 0.0e+00 1344.7
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1217.2
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1106.7
Cme01g00311 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1095.5
Cme06g02456 . 1 895 Trehalose Biosynthesis Gene Families AT1G23870 58.7 0.0e+00 1081.2
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 72.8 0.0e+00 1330.1
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1236.9
Cme08g00207 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cme01g00311 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 3.5e-313 1070.8
Cme06g02456 . 1 900 Trehalose Biosynthesis Gene Families AT1G60140 56.4 2.6e-308 1054.7
Cme06g02456 . 1 899 Trehalose Biosynthesis Gene Families AT1G68020 67.2 0.0e+00 1242.6
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.7
Cme01g00311 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1135.9
Cme10g00508 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.1
Cme02g01956 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1096.3
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cme02g01956 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 64.0 0.0e+00 1111.7
Cme08g00207 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.0e-294 1008.4
Cme01g00311 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.0e-290 996.1
Cme06g02456 . 1 905 Trehalose Biosynthesis Gene Families AT1G70290 53.0 3.3e-276 948.0
Cme07g00497 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.7 0.0e+00 1406.7
Cme12g01248 . 1 931 Trehalose Biosynthesis Gene Families AT1G78580 71.3 0.0e+00 1309.3
Cme10g00508 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.4 6.9e-309 1056.6
Cme02g01956 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.0e-299 1026.2
Cme08g00207 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.0e-299 1026.2
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT2G18700 55.0 2.1e-289 991.9
Cme01g00311 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 4.6e-289 990.7
Cme06g02456 . 1 891 Trehalose Biosynthesis Gene Families AT4G17770 75.1 0.0e+00 1358.6
Cme08g00207 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.2
Cme01g00311 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.1
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1139.4
Cme02g01956 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1114.4
Cme07g00497 . 93 916 Trehalose Biosynthesis Gene Families AT4G27550 60.6 1.0e-287 986.1
Cme12g01248 . 93 929 Trehalose Biosynthesis Gene Families AT4G27550 57.4 6.6e-274 940.3
Cme07g00497 . 1 922 Trehalose Biosynthesis Gene Families AT1G78580 75.7 0.0e+00 1406.7
Cme12g01248 . 1 931 Trehalose Biosynthesis Gene Families AT1G78580 71.3 0.0e+00 1309.3
Cme07g00497 . 85 693 Trehalose Biosynthesis Gene Families AT1G16980 62.9 1.2e-231 799.7
Cme12g01248 . 88 698 Trehalose Biosynthesis Gene Families AT1G16980 61.1 1.5e-226 782.7
Cme07g00497 . 83 618 Trehalose Biosynthesis Gene Families AT1G17000 58.8 5.7e-177 618.2
Cme12g01248 . 93 613 Trehalose Biosynthesis Gene Families AT1G17000 57.0 9.1e-175 610.9
Cme07g00497 . 93 916 Trehalose Biosynthesis Gene Families AT4G27550 60.6 1.0e-287 986.1
Cme12g01248 . 93 929 Trehalose Biosynthesis Gene Families AT4G27550 57.4 6.6e-274 940.3
Cme06g02456 . 1 891 Trehalose Biosynthesis Gene Families AT4G17770 75.1 0.0e+00 1358.6
Cme08g00207 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 67.2 0.0e+00 1187.2
Cme01g00311 . 1 849 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1157.1
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT4G17770 63.9 0.0e+00 1139.4
Cme02g01956 . 1 838 Trehalose Biosynthesis Gene Families AT4G17770 63.1 0.0e+00 1114.4
Cme06g02456 . 1 899 Trehalose Biosynthesis Gene Families AT1G68020 67.2 0.0e+00 1242.6
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G68020 64.5 0.0e+00 1168.7
Cme01g00311 . 1 844 Trehalose Biosynthesis Gene Families AT1G68020 62.8 0.0e+00 1135.9
Cme10g00508 . 1 840 Trehalose Biosynthesis Gene Families AT1G68020 63.6 0.0e+00 1110.1
Cme02g01956 . 1 835 Trehalose Biosynthesis Gene Families AT1G68020 62.7 0.0e+00 1096.3
Cme01g00311 . 1 841 Trehalose Biosynthesis Gene Families AT1G06410 77.9 0.0e+00 1372.8
Cme08g00207 . 1 845 Trehalose Biosynthesis Gene Families AT1G06410 75.7 0.0e+00 1355.1
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT1G06410 62.7 0.0e+00 1127.9
Cme10g00508 . 1 842 Trehalose Biosynthesis Gene Families AT1G06410 62.9 0.0e+00 1095.5
Cme02g01956 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 60.4 5.4e-306 1047.0
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G70290 68.0 0.0e+00 1193.3
Cme02g01956 . 1 852 Trehalose Biosynthesis Gene Families AT1G70290 64.0 0.0e+00 1111.7
Cme08g00207 . 1 849 Trehalose Biosynthesis Gene Families AT1G70290 57.4 2.0e-294 1008.4
Cme01g00311 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 57.6 1.0e-290 996.1
Cme06g02456 . 1 905 Trehalose Biosynthesis Gene Families AT1G70290 53.0 3.3e-276 948.0
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G23870 74.2 0.0e+00 1344.7
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G23870 66.9 0.0e+00 1217.2
Cme08g00207 . 1 846 Trehalose Biosynthesis Gene Families AT1G23870 61.4 0.0e+00 1106.7
Cme01g00311 . 1 842 Trehalose Biosynthesis Gene Families AT1G23870 60.8 0.0e+00 1095.5
Cme06g02456 . 1 895 Trehalose Biosynthesis Gene Families AT1G23870 58.7 0.0e+00 1081.2
Cme10g00508 . 1 859 Trehalose Biosynthesis Gene Families AT1G60140 72.8 0.0e+00 1330.1
Cme02g01956 . 1 855 Trehalose Biosynthesis Gene Families AT1G60140 68.3 0.0e+00 1236.9
Cme08g00207 . 1 850 Trehalose Biosynthesis Gene Families AT1G60140 60.8 0.0e+00 1085.5
Cme01g00311 . 1 845 Trehalose Biosynthesis Gene Families AT1G60140 60.0 3.5e-313 1070.8
Cme06g02456 . 1 900 Trehalose Biosynthesis Gene Families AT1G60140 56.4 2.6e-308 1054.7
Cme10g00508 . 34 842 Trehalose Biosynthesis Gene Families AT2G18700 61.4 6.9e-309 1056.6
Cme02g01956 . 10 837 Trehalose Biosynthesis Gene Families AT2G18700 59.9 1.0e-299 1026.2
Cme08g00207 . 1 842 Trehalose Biosynthesis Gene Families AT2G18700 58.8 1.0e-299 1026.2
Cme06g02456 . 1 896 Trehalose Biosynthesis Gene Families AT2G18700 55.0 2.1e-289 991.9
Cme01g00311 . 56 841 Trehalose Biosynthesis Gene Families AT2G18700 59.2 4.6e-289 990.7
Cme09g01841 . 21 572 Trehalose Biosynthesis Gene Families AT4G24040 56.9 1.9e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001443 2 5 3 3 2 1 2 2 1 2 2 2 2 2 2 2 2 4 2 2 2 2 2 2 1 2 2 6 6 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cme12g01248 Cme_Chr12 FPKM 0.346829 0.386213 0.0 0.110888 5.161625 1.54798 3.419056 0.045943 0.080719 0.086044