Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01248 ATGCTGTCAAACAATCATAACAACAGTCCTCCTACTCCCAGAACCAGATTAGAGAGGCTTCTTAGGGAAAGAGAGCTCAGGAGATCAAACAGATCTTCTTCTCTCAATGATCAAGAATCACGAGATGCTTGCAGTCTGGGAGAAGTCAATAGTTATGATCTCTTCACAAATGCTGGTGATATTTGTGGGTCGTTTAACGAGGAAGATGTCTTAGAAGGGATATCAGTGGTAAAAGATAGCTTTGATGGATTCCAAAGGCCGGAAGGGAGGACTTATAAGCAACGTCTTCTTGTTGTAGCGAACAGGTTGCCTGTGTCTGCTGTTAGAAAAGGGAAGGAGACATGGCATCTCGAAATTAGCGTCGGTGGTTTAGTCAGTGCACTTTTAGGACTAAAGGAGTTTGAGGCAAGATGGATTGGTTGGGCTGGGGTGAATGTACCTGATGAAGCAGGACAAAGAGCCCTAGAGAAAGCATTAGCTGAAAAGAAATGCATACCGGTCTTTCTTGATGAGGAGATTGTTCATCAGTATTACAATGGCTACTGTAACAACATCTTGTGGCCTCTATTTCATTATCTTGGTCTCCCACAAGAAGATCGTCTTGCAACAACACGAAGTTTTCAGTCACAGTTTGATGCATATAAGAAGGCAAACCAAATGTTTGCTGATGTTGTAAACAAATATTATGAAGAGGGAGATGTTGTTTGGTGTCACGATTATCACTTGATGTTTCTCCCAAAATGTCTTAAAGAGCACAATAGCACGATGAAAGTTGGTTGGTTCCTTCACACCCCATTTCCATCCTCAGAGATACATAGAACTCTACCATCTCGTTCAGAGCTGCTGAGATCTGTTCTTGCAGCTGATTTAGTTGGTTTCCACACATATGATTATGCCAGGCATTTTGTTAGCGCCTGCACCCGTATTCTTGGATTGGAAGGCACACCTGAAGGAGTAGAGGATCAAGGAAAACTCACTCACATAGCTGCTTTTCCTATTGGAATAGATTCTGAGCGATTCATACGAGCTCTTAAACTCCCTCAAGTCCAGGATCACATAAAAGAACTACAAGAAAGATTTGCAGGACGAAAGGTAATGCTGGGTGTTGATCGTCTTGATATGATTAAGGGAATACCCCAAAAGATTTTGGCATTTGAAAAATTTCTTGAAGAAAATCCAAAGTGGCGTGATAAAGTAGTTTTGCTGCAAATTGCAGTGCCAACAAGGACAGATGTTCCCGAGAGGAATGGAGCATTTAAAGACCTTGTCTTCTTTGATGTAACAGATCAAAAGCTAACGAGTCAGGTTCATGAGATCGTCGGGCGAATTAATGGGAGATTTGGCACTCTTAGTGCAGTTCCAATACATCATCTAGATCGTTCACTCGATTTCCATGCATTATGTGCTTTATATGCTGTCACCGATGTGGCACTAGTTACATCTTTGAGAGATGGAATGAATCTTGTGAGCTATGAGTTTGTTGCCTGCCAAGCTTCCAAGAAAGGTGCAGCACAGTCATTAGGTGCCGGAGCTATTTTAGTTAATCCATGGAATATCACTGAAGTTGCTGCTTCAATTGGTTATGCTTTGGATATGCCAGCTGACGAAAGAGAAAGACGTCACCATCATAATTTTATGCATGTTACAACTCACACATCCCAAGAATGGGCTGCAACATTTGTGAGCGAACTCAATGACACCATAGTTGAAGCTCAGATCAGAACCAGACAGATTCCACCTTTACTTCCAATTAGAGAAGCAGTGAACTGTTATTCTCGATCGCATAATCGATTGGGTTTCAATGCTACCTTAACAGAAGCAGTTGATGCCCTTGGAAGAAGATATGGCCAAATAAGAGACATGGATCTTAGATTAAATCCAGCTGTAAAAGAGCCCTTGAAGAAGCTTTGCGATGACAAGAATACTACAGTGGTTGTCCTCAGTGGGAGTGACAGAAGTGTCCTAGACGATAATTTCGGTGACTACAACATGTGGTTGGCAGCAGAAAACGGGATGTTCTTACGTCCTACAAAGGGTGAATGGATGACGACAATGCCTGAAAATTTACATATGGATTGGGTTGAGAGTGTTAAGCATGTGTTCGAGTATTTTACTGAAAGAACTCCCAGATCCCATTTCGAGCTTCGTGAAACTTCACTGGTGTGGAACTACAAATATGCAGATGTTGAGTTTGGAAGACTTCAAGCGAGGGACTTGTTGCAGCATCTATGGACCGGTCCAATCTCAAATGCATCAGTTGATGTTGTCCAAGGCAGTCGCTCAGTTGAGGTTCGAGCAGTTGGTGTTACAAAGGGTGCTGCCATTGATCGAATATTGGGAGAAATAGTTCGTGACAAAGGCATAAACAAGCCTATTGACTATGTTCTCTGTGTTGGACACTTCCTAACCAAGGATGAAGATGTCTATACGTTTTTCGAACCCGACCTTCCTACCGAAGTGCCAGCTGCAGTAGCAAGAACAACAGTCACCAATCCTTTTGGAGGAGTACCAGTGCCAAAGATCCCAAACACTGTAGTCTCACCAAGCAGGTCAGCACGTCTCAAGAAACAACGCTCCCTTTCCATTTTAGAAAGAAAAGCAAATAGCCATGGGAGTGCAGTGTTTTGGAGGCCTGTAGTTCAGGATCGATTGTCGCTGCACGAGGGTTCATCTGTTCTCGATCTCAAGGGCGACAATTACTTCTCCTGTGCTGTGGGGCGGAAAAGATCCAATGCCAGATATCTTATTGGATCATCGGATGATGTTGTCACACTTGTGAAGGAGTTGTCAGAATGTTCAGAGTGTCAAATTTGA 2814 42.93 MLSNNHNNSPPTPRTRLERLLRERELRRSNRSSSLNDQESRDACSLGEVNSYDLFTNAGDICGSFNEEDVLEGISVVKDSFDGFQRPEGRTYKQRLLVVANRLPVSAVRKGKETWHLEISVGGLVSALLGLKEFEARWIGWAGVNVPDEAGQRALEKALAEKKCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFDAYKKANQMFADVVNKYYEEGDVVWCHDYHLMFLPKCLKEHNSTMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGKLTHIAAFPIGIDSERFIRALKLPQVQDHIKELQERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPKWRDKVVLLQIAVPTRTDVPERNGAFKDLVFFDVTDQKLTSQVHEIVGRINGRFGTLSAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGAAQSLGAGAILVNPWNITEVAASIGYALDMPADERERRHHHNFMHVTTHTSQEWAATFVSELNDTIVEAQIRTRQIPPLLPIREAVNCYSRSHNRLGFNATLTEAVDALGRRYGQIRDMDLRLNPAVKEPLKKLCDDKNTTVVVLSGSDRSVLDDNFGDYNMWLAAENGMFLRPTKGEWMTTMPENLHMDWVESVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQARDLLQHLWTGPISNASVDVVQGSRSVEVRAVGVTKGAAIDRILGEIVRDKGINKPIDYVLCVGHFLTKDEDVYTFFEPDLPTEVPAAVARTTVTNPFGGVPVPKIPNTVVSPSRSARLKKQRSLSILERKANSHGSAVFWRPVVQDRLSLHEGSSVLDLKGDNYFSCAVGRKRSNARYLIGSSDDVVTLVKELSECSECQI 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20614503 20622636 - MELO3C002694.2.1 Cme12g01248 344465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01248 937 Gene3D - 621 810 IPR023214 -
Cme12g01248 937 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 94 568 - -
Cme12g01248 937 CDD GT20_TPS 95 565 IPR001830 GO:0003824|GO:0005992
Cme12g01248 937 Gene3D - 687 767 - -
Cme12g01248 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 49 929 - -
Cme12g01248 937 Gene3D Glycogen Phosphorylase B; 88 341 - -
Cme12g01248 937 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 49 929 IPR001830 GO:0003824|GO:0005992
Cme12g01248 937 SUPERFAMILY HAD-like 621 923 IPR036412 -
Cme12g01248 937 CDD HAD_TPP 598 815 - -
Cme12g01248 937 Pfam Glycosyltransferase family 20 95 565 IPR001830 GO:0003824|GO:0005992
Cme12g01248 937 TIGRFAM trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming) 95 565 IPR012766 GO:0003825|GO:0005992
Cme12g01248 937 Pfam Trehalose-phosphatase 621 827 IPR003337 GO:0003824|GO:0005992
Cme12g01248 937 Gene3D Glycogen Phosphorylase B; 342 549 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00497 Cme-Chr7:4052377 Cme12g01248 Cme-Chr12:20614503 0 dispersed
Cme08g00207 Cme-Chr8:1392770 Cme12g01248 Cme-Chr12:20614503 2.76E-128 dispersed
Cme12g01248 Cme-Chr12:20614503 Cme10g00508 Cme-Chr10:3271116 1.32E-131 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01248 K16055 - csv:101213690 1724.14