Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01251 | ATGAGTTGTTATGAGGAAGAAGATGAAGAATCAGGAGTAGTAGGATTAAGAAAATCATCATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAGAGAATAGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCTCCCGTGGTCGTCTCTATGAATATGCTAACAACAGTGTTAGGGCTACGATTTCGAGGTACAAAAAGGCATATTCGGATCCCTCCACCGCCATGTCCGTTTCAGAAGCCAATACTCAGTTCTACCAGCAAGAATCAGCCAAATTAAGAGCTCAAATCGGAAATTTGCAAAACCTTAACAGGCATTTGTTGGGGGAATCCATTAGTTCGTTATCCGTTAAAGATTTGAAAAGCCTAGAGGTCAAATTGGAGAAAGGACTTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTTCGGAGATTGAATACATGCAAAAACGGGAAATTGAACTGCACACTAACAACCAGCTGATACGAGCAAAGATAGCAGAGACAGAGAGAAGCCAACAAAACAGAAATGCAAGTAATAATGGAATAGCAGCAACAGGAGGAAGAGGAGATGAAGGATCAATGGCTACAAATTTAGAGGTCAATAATCATCATCATCAATATGACTCAACAAACTACTTTGATCCCCATCATAATCACCCTATATCTCTCCAACTTGTGTAA | 771 | 39.17 | MSCYEEEDEESGVVGLRKSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGLSRIRSRKNELLFSEIEYMQKREIELHTNNQLIRAKIAETERSQQNRNASNNGIAATGGRGDEGSMATNLEVNNHHHQYDSTNYFDPHHNHPISLQLV | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 20640594 | 20645127 | - | MELO3C002691.2.1 | Cme12g01251 | 344468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01251 | 256 | MobiDBLite | consensus disorder prediction | 225 | 256 | - | - | |
Cme12g01251 | 256 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
Cme12g01251 | 256 | Pfam | K-box region | 109 | 195 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme12g01251 | 256 | ProSiteProfiles | MADS-box domain profile. | 25 | 85 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | Gene3D | - | 37 | 109 | IPR036879 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | PANTHER | FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE | 25 | 245 | - | - | |
Cme12g01251 | 256 | MobiDBLite | consensus disorder prediction | 198 | 256 | - | - | |
Cme12g01251 | 256 | PRINTS | MADS domain signature | 27 | 47 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | PRINTS | MADS domain signature | 47 | 62 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | PRINTS | MADS domain signature | 62 | 83 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 25 | 245 | - | - | |
Cme12g01251 | 256 | CDD | MADS_MEF2_like | 26 | 95 | IPR033896 | GO:0000977|GO:0045944 | |
Cme12g01251 | 256 | SMART | madsneu2 | 25 | 84 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | ProSiteProfiles | K-box domain profile. | 111 | 201 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cme12g01251 | 256 | SUPERFAMILY | SRF-like | 26 | 98 | IPR036879 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | MobiDBLite | consensus disorder prediction | 198 | 213 | - | - | |
Cme12g01251 | 256 | ProSitePatterns | MADS-box domain signature. | 27 | 81 | IPR002100 | GO:0003677|GO:0046983 | |
Cme12g01251 | 256 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 34 | 81 | IPR002100 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme08g00190 | Cme12g01251 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g01551 | Cme-Chr11:23043868 | Cme12g01251 | Cme-Chr12:20640594 | 3.51E-37 | dispersed | |
Cme12g01251 | Cme-Chr12:20640594 | Cme11g02324 | Cme-Chr11:30303986 | 4.87E-48 | dispersed | |
Cme12g01921 | Cme-Chr12:25243840 | Cme12g01251 | Cme-Chr12:20640594 | 6.89E-47 | dispersed | |
Cme11g01552 | Cme-Chr11:23047546 | Cme12g01251 | Cme-Chr12:20640594 | 3.09E-06 | transposed | |
Cme12g01251 | Cme-Chr12:20640594 | Cme08g00190 | Cme-Chr8:1304027 | 9.36E-106 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42327 | PF01486 | K-box | 3.60E-26 | No_clan | Cme | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01251 | K09264 | - | csv:101205366 | 450.284 |