Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01251 ATGAGTTGTTATGAGGAAGAAGATGAAGAATCAGGAGTAGTAGGATTAAGAAAATCATCATCATCATCAAGAACAGGAAGAGGAAAGATTGAAATAAAGAGAATAGAAAATACAACAAATCGTCAAGTTACTTTCTGTAAACGAAGAAATGGTTTGCTTAAGAAAGCTTATGAACTCTCTGTCCTTTGTGATGCTGAGGTTGCTCTTATCGTCTTCTCCTCCCGTGGTCGTCTCTATGAATATGCTAACAACAGTGTTAGGGCTACGATTTCGAGGTACAAAAAGGCATATTCGGATCCCTCCACCGCCATGTCCGTTTCAGAAGCCAATACTCAGTTCTACCAGCAAGAATCAGCCAAATTAAGAGCTCAAATCGGAAATTTGCAAAACCTTAACAGGCATTTGTTGGGGGAATCCATTAGTTCGTTATCCGTTAAAGATTTGAAAAGCCTAGAGGTCAAATTGGAGAAAGGACTTAGCCGAATTCGATCCAGAAAGAATGAGCTTCTGTTTTCGGAGATTGAATACATGCAAAAACGGGAAATTGAACTGCACACTAACAACCAGCTGATACGAGCAAAGATAGCAGAGACAGAGAGAAGCCAACAAAACAGAAATGCAAGTAATAATGGAATAGCAGCAACAGGAGGAAGAGGAGATGAAGGATCAATGGCTACAAATTTAGAGGTCAATAATCATCATCATCAATATGACTCAACAAACTACTTTGATCCCCATCATAATCACCCTATATCTCTCCAACTTGTGTAA 771 39.17 MSCYEEEDEESGVVGLRKSSSSSRTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVRATISRYKKAYSDPSTAMSVSEANTQFYQQESAKLRAQIGNLQNLNRHLLGESISSLSVKDLKSLEVKLEKGLSRIRSRKNELLFSEIEYMQKREIELHTNNQLIRAKIAETERSQQNRNASNNGIAATGGRGDEGSMATNLEVNNHHHQYDSTNYFDPHHNHPISLQLV 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20640594 20645127 - MELO3C002691.2.1 Cme12g01251 344468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01251 256 MobiDBLite consensus disorder prediction 225 256 - -
Cme12g01251 256 MobiDBLite consensus disorder prediction 1 30 - -
Cme12g01251 256 Pfam K-box region 109 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme12g01251 256 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Cme12g01251 256 Gene3D - 37 109 IPR036879 GO:0003677|GO:0046983
Cme12g01251 256 PANTHER FLORAL HOMEOTIC PROTEIN AGAMOUS-LIKE 25 245 - -
Cme12g01251 256 MobiDBLite consensus disorder prediction 198 256 - -
Cme12g01251 256 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Cme12g01251 256 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Cme12g01251 256 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Cme12g01251 256 PANTHER SERUM RESPONSE FACTOR HOMOLOG 25 245 - -
Cme12g01251 256 CDD MADS_MEF2_like 26 95 IPR033896 GO:0000977|GO:0045944
Cme12g01251 256 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
Cme12g01251 256 ProSiteProfiles K-box domain profile. 111 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cme12g01251 256 SUPERFAMILY SRF-like 26 98 IPR036879 GO:0003677|GO:0046983
Cme12g01251 256 MobiDBLite consensus disorder prediction 198 213 - -
Cme12g01251 256 ProSitePatterns MADS-box domain signature. 27 81 IPR002100 GO:0003677|GO:0046983
Cme12g01251 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 34 81 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00190 Cme12g01251 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g01551 Cme-Chr11:23043868 Cme12g01251 Cme-Chr12:20640594 3.51E-37 dispersed
Cme12g01251 Cme-Chr12:20640594 Cme11g02324 Cme-Chr11:30303986 4.87E-48 dispersed
Cme12g01921 Cme-Chr12:25243840 Cme12g01251 Cme-Chr12:20640594 6.89E-47 dispersed
Cme11g01552 Cme-Chr11:23047546 Cme12g01251 Cme-Chr12:20640594 3.09E-06 transposed
Cme12g01251 Cme-Chr12:20640594 Cme08g00190 Cme-Chr8:1304027 9.36E-106 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42327 PF01486 K-box 3.60E-26 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01251 K09264 - csv:101205366 450.284