Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01253 | ATGGAAACGAATAACAGTAACAACAACGGGGTGAGGTTTTTGTTAGGGAAGCAATCGTCGATGGCGCCGGATCGCCAGCCAGAGGAGGCGAAGTTGGCGGAAGACGGCGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTGGATGGGATTAAAGAGCTTTTAGATTCAGGAATTGATGTTAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCGAGATCGTCGATTTATTGCTCCGCCGTGGCGCTGAAATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAACCATGAAGTTATCAAATTGCTGGAAAAAAGTGGCGCAAAACATCTGATGGCTCCCATGCATGTCAAACATGCTCGTGAAGTCCCAGAATACGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGAACCTTCCATCTTGCATCGTGGCGCGGAATCCAAGTTGCAGTTAAAGAGCTTCCTGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTCAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAACGTGGTTCAATTTCTTGGTGCTGTTACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTTTTACAGAAAAAAGGACCACTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAATAAACCTGCACCTATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACAGTCAAGGAGGATAAACCTCTAACATGTCAAGACACTGCTTGCCGATACGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGACACCAAAGTAGATGTTTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGACAACCACCATTTTCAAACAAAAAAGAAAATGCCATTTCTAAAGGGTATGCAGCAGGAATGCGCCCACCTTTCAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGCTTGCTGGGATGAGAAGCCATCAAAGCGACCAACTTTTAGACAGATAATCGTAAGGTTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACGTTGAGATGTTTTCAGGATCCTGATGCCAAGATAAGAAGAGACCATCTCTCAAGTAGCCGGAGTCTTTCATCGCGATCTGCAAGCAGCATATGA | 1377 | 44.01 | METNNSNNNGVRFLLGKQSSMAPDRQPEEAKLAEDGEEIDPGVRLMYLANEGDLDGIKELLDSGIDVNFHDVDNRTALHVAACQGCSEIVDLLLRRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKSGAKHLMAPMHVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQKKGPLKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAISKGYAAGMRPPFKAPAKCYAHGIKELIEACWDEKPSKRPTFRQIIVRLETIHHSLSHRRRWKLPTLRCFQDPDAKIRRDHLSSSRSLSSRSASSI | 458 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 20660326 | 20664810 | - | MELO3C002689.2.1 | Cme12g01253 | 344470 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01253 | 458 | CDD | STKc_MAP3K-like | 167 | 411 | - | - | |
Cme12g01253 | 458 | Gene3D | - | 13 | 148 | IPR036770 | - | |
Cme12g01253 | 458 | ProSiteProfiles | Ankyrin repeat region circular profile. | 73 | 105 | - | - | |
Cme12g01253 | 458 | SMART | ANK_2a | 73 | 102 | IPR002110 | GO:0005515 | |
Cme12g01253 | 458 | SMART | ANK_2a | 106 | 135 | IPR002110 | GO:0005515 | |
Cme12g01253 | 458 | SMART | ANK_2a | 40 | 69 | IPR002110 | GO:0005515 | |
Cme12g01253 | 458 | SUPERFAMILY | Protein kinase-like (PK-like) | 167 | 413 | IPR011009 | - | |
Cme12g01253 | 458 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
Cme12g01253 | 458 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Cme12g01253 | 458 | ProSiteProfiles | Protein kinase domain profile. | 123 | 418 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cme12g01253 | 458 | Pfam | Ankyrin repeats (3 copies) | 45 | 132 | IPR002110 | GO:0005515 | |
Cme12g01253 | 458 | Gene3D | Transferase(Phosphotransferase) domain 1 | 234 | 441 | - | - | |
Cme12g01253 | 458 | PANTHER | SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 | 13 | 441 | - | - | |
Cme12g01253 | 458 | Gene3D | Phosphorylase Kinase; domain 1 | 157 | 233 | - | - | |
Cme12g01253 | 458 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 13 | 441 | - | - | |
Cme12g01253 | 458 | SUPERFAMILY | Ankyrin repeat | 44 | 133 | IPR036770 | - | |
Cme12g01253 | 458 | Pfam | Protein tyrosine and serine/threonine kinase | 167 | 410 | IPR001245 | GO:0004672|GO:0006468 | |
Cme12g01253 | 458 | PIRSF | ILK | 1 | 433 | - | - | |
Cme12g01253 | 458 | ProSiteProfiles | Ankyrin repeat profile. | 73 | 105 | IPR002110 | GO:0005515 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cme08g00191 | Cme12g01253 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme10g00387 | Cme-Chr10:2488737 | Cme12g01253 | Cme-Chr12:20660326 | 2.20E-103 | dispersed | |
Cme11g01546 | Cme-Chr11:22963155 | Cme12g01253 | Cme-Chr12:20660326 | 0 | dispersed | |
Cme12g01253 | Cme-Chr12:20660326 | Cme11g02082 | Cme-Chr11:28488715 | 3.10E-46 | dispersed | |
Cme09g00898 | Cme-Chr9:12374775 | Cme12g01253 | Cme-Chr12:20660326 | 5.77E-13 | transposed | |
Cme01g00295 | Cme-Chr1:2211582 | Cme12g01253 | Cme-Chr12:20660326 | 2.25E-139 | wgd | |
Cme12g01253 | Cme-Chr12:20660326 | Cme08g00191 | Cme-Chr8:1316654 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65306 | PF07714 | PK_Tyr_Ser-Thr | 4.40E-55 | CL0016 | Cme | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01253 | - | - | csv:101205123 | 889.797 |