Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01253 ATGGAAACGAATAACAGTAACAACAACGGGGTGAGGTTTTTGTTAGGGAAGCAATCGTCGATGGCGCCGGATCGCCAGCCAGAGGAGGCGAAGTTGGCGGAAGACGGCGAGGAGATCGATCCAGGGGTGAGATTGATGTATTTGGCGAATGAAGGCGATTTGGATGGGATTAAAGAGCTTTTAGATTCAGGAATTGATGTTAATTTTCACGATGTTGATAATCGGACGGCGCTTCATGTTGCTGCTTGTCAAGGCTGCTCCGAGATCGTCGATTTATTGCTCCGCCGTGGCGCTGAAATTGACCCTAAAGATCGCTGGGGTAGTACGCCTCTTGCAGATGCTATATTCTACAAAAACCATGAAGTTATCAAATTGCTGGAAAAAAGTGGCGCAAAACATCTGATGGCTCCCATGCATGTCAAACATGCTCGTGAAGTCCCAGAATACGAAATTGATCCTAAAGAATTTGACTTCACAAACAGTGTCAACTTGACCAAGGGAACCTTCCATCTTGCATCGTGGCGCGGAATCCAAGTTGCAGTTAAAGAGCTTCCTGAGGATGTGATTTCAGAGGAGGATAAAGTGAACGCCTTCAGAGATGAGCTTGCATTGCTTCAGAAGATTCGGCATCCTAACGTGGTTCAATTTCTTGGTGCTGTTACTCAAAGTAGTCCCATGATGATTGTTACTGAATATTTGCCTAAGGGAGATCTTTGTCAACTTTTACAGAAAAAAGGACCACTAAAACCAATTGTAGCTGTGAAATTTGCCCTTGATATTGCAAGGGGAATGAACTATTTGCACGAAAATAAACCTGCACCTATCATCCACCGTGATCTCGAGCCATCAAATATATTGCGAGATGACACTGGGAACCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTTGCTCACAGTCAAGGAGGATAAACCTCTAACATGTCAAGACACTGCTTGCCGATACGTCGCTCCAGAAGTTTTCAAAAACAATGGATACGACACCAAAGTAGATGTTTTCTCCTTTGCTTTAATTCTACAAGAGATGATCGAAGGACAACCACCATTTTCAAACAAAAAAGAAAATGCCATTTCTAAAGGGTATGCAGCAGGAATGCGCCCACCTTTCAAAGCTCCAGCTAAATGCTACGCCCATGGAATTAAAGAGTTGATTGAAGCTTGCTGGGATGAGAAGCCATCAAAGCGACCAACTTTTAGACAGATAATCGTAAGGTTGGAAACAATTCATCACAGTCTTAGCCATAGAAGGCGTTGGAAGCTCCCAACGTTGAGATGTTTTCAGGATCCTGATGCCAAGATAAGAAGAGACCATCTCTCAAGTAGCCGGAGTCTTTCATCGCGATCTGCAAGCAGCATATGA 1377 44.01 METNNSNNNGVRFLLGKQSSMAPDRQPEEAKLAEDGEEIDPGVRLMYLANEGDLDGIKELLDSGIDVNFHDVDNRTALHVAACQGCSEIVDLLLRRGAEIDPKDRWGSTPLADAIFYKNHEVIKLLEKSGAKHLMAPMHVKHAREVPEYEIDPKEFDFTNSVNLTKGTFHLASWRGIQVAVKELPEDVISEEDKVNAFRDELALLQKIRHPNVVQFLGAVTQSSPMMIVTEYLPKGDLCQLLQKKGPLKPIVAVKFALDIARGMNYLHENKPAPIIHRDLEPSNILRDDTGNLKVADFGVSKLLTVKEDKPLTCQDTACRYVAPEVFKNNGYDTKVDVFSFALILQEMIEGQPPFSNKKENAISKGYAAGMRPPFKAPAKCYAHGIKELIEACWDEKPSKRPTFRQIIVRLETIHHSLSHRRRWKLPTLRCFQDPDAKIRRDHLSSSRSLSSRSASSI 458
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20660326 20664810 - MELO3C002689.2.1 Cme12g01253 344470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01253 458 CDD STKc_MAP3K-like 167 411 - -
Cme12g01253 458 Gene3D - 13 148 IPR036770 -
Cme12g01253 458 ProSiteProfiles Ankyrin repeat region circular profile. 73 105 - -
Cme12g01253 458 SMART ANK_2a 73 102 IPR002110 GO:0005515
Cme12g01253 458 SMART ANK_2a 106 135 IPR002110 GO:0005515
Cme12g01253 458 SMART ANK_2a 40 69 IPR002110 GO:0005515
Cme12g01253 458 SUPERFAMILY Protein kinase-like (PK-like) 167 413 IPR011009 -
Cme12g01253 458 MobiDBLite consensus disorder prediction 1 25 - -
Cme12g01253 458 MobiDBLite consensus disorder prediction 1 15 - -
Cme12g01253 458 ProSiteProfiles Protein kinase domain profile. 123 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01253 458 Pfam Ankyrin repeats (3 copies) 45 132 IPR002110 GO:0005515
Cme12g01253 458 Gene3D Transferase(Phosphotransferase) domain 1 234 441 - -
Cme12g01253 458 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 13 441 - -
Cme12g01253 458 Gene3D Phosphorylase Kinase; domain 1 157 233 - -
Cme12g01253 458 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 13 441 - -
Cme12g01253 458 SUPERFAMILY Ankyrin repeat 44 133 IPR036770 -
Cme12g01253 458 Pfam Protein tyrosine and serine/threonine kinase 167 410 IPR001245 GO:0004672|GO:0006468
Cme12g01253 458 PIRSF ILK 1 433 - -
Cme12g01253 458 ProSiteProfiles Ankyrin repeat profile. 73 105 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00191 Cme12g01253 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00387 Cme-Chr10:2488737 Cme12g01253 Cme-Chr12:20660326 2.20E-103 dispersed
Cme11g01546 Cme-Chr11:22963155 Cme12g01253 Cme-Chr12:20660326 0 dispersed
Cme12g01253 Cme-Chr12:20660326 Cme11g02082 Cme-Chr11:28488715 3.10E-46 dispersed
Cme09g00898 Cme-Chr9:12374775 Cme12g01253 Cme-Chr12:20660326 5.77E-13 transposed
Cme01g00295 Cme-Chr1:2211582 Cme12g01253 Cme-Chr12:20660326 2.25E-139 wgd
Cme12g01253 Cme-Chr12:20660326 Cme08g00191 Cme-Chr8:1316654 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65306 PF07714 PK_Tyr_Ser-Thr 4.40E-55 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01253 - - csv:101205123 889.797