Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01256 ATGATGGTGGCCAAGAGCTTCTTTGTTTTCATTTTTCTTGTGGTGGATTGCTTCATGTTCTTCAGATTTGCAAATTCCAAGGTTCCCCAAGAAGAGGTTGATGTGCTACAGCAAATTACGAGAACATTAGGTGCGGTTTATTGGAAATTCAATAGTGACTCCTGTGTTGTTGAGATGTTTGGGGTGACAGAAAAATCTCCCAGGGGATCTGAGACTATAATTGATTGTGATTGCAGCATCGAGAATAGCACATTTTGTCATGTCGTAAGGATAGAATTAAAAAATCACAATCTGCCTGGTGTTCTTCCACCTGAAATACTCAAACTTCCTTACCTGCAAGTAGTTGATTTTGCTTACAACTACCTTCATGGTAACATACCTCAAGAATGGGCTTCAACACGGCTGACAACAATCTCTCTTCTTGTTAATCGGTTGTCAGGGGAAATATCAGATGCATTGGGGAATATTACTACTCTAACATCACTGAACCTTGAAGGAAACCAATTTAATGGTGCAATACCATCACAACTTGGGAGGTTAAGCAACTTGCAATACTTGTTGCTATCTTCTAATCAATTGACTGGCACAATACCGACAACGTTTGCCGGTTTGAAAAACTTAACAGATTTCCGGATAAATGATAACAACCTAAATGGATCCATACCTGAATTCATAAAGAATTGGACACTACTTAAGAGATTAGAACTGCATGCAAGTGGACTTCAGGGACCAATTCCTCCAAAAATATCCCTTCTGAGGAACTTACAAGAATTAAGGATCAGCGATATTAATGGGCCAAAGCAGGATTTTCCTGAGTTGACAAACATGACGGGCATGGTTAGATTGGTTCTGAGAAATTGTAACATTGCTGGAAAGGTTCCTTCATACTTGTGGACGTTACCAGTCATGGAAATGCTGGACGTCAGCTTTAATCAGTTAACTGGGGAAATTCCAGAGGATATAAACATGGAGCGCATTAGATTTCTCTTTTTAACTAGCAATATGCTGAGTGGCAACCTACCAGAGTCAATCTTGAAGGATGGTACTAATGTCGATCTTTCATACAATAACTTGACATGGCAAGGCCCTGAGCACCATGCTTGTAGAAAGAATTTGAATATGAATCTGAACTTGTTCCGAAGTTCTTCAACTAGCAACACCTTACAAGAAAGTCTCCCCTGCTTAAAGGATTCCATCTGTTCAAAATATTCAAAATGTTGGTTCGTCAATTCTGGTGGGAATGACTTAACGATGGAGGTAAACAACAGAAACATTCTCTACAACGGGGATGCAGATGTTGAAGGTGGGACAGCAAAATTCTACATTGATCGAGATAGCTACTGGGGATTGAGTAGTACTGGAGATTTTATGGACGATTTTGATTACCAAAATACACGCTACACTTTATCCCTGCCTTCATCAAATTTGTCCGAGCTATATTCAACAGCACGTCGAAGTCCAATTACGCTCACTTATTTCCATCATTGCTTGGATAATGGAAACTACTCAGTGACACTTCATTTTGCTGAGTTACAATTTACAAATGATAAGACATATACAAGCCTTGGAAGGCGGAAATTTGATATCTACATTCAGGATAGGTTGGTATTGGAGAATTTTGATATCGATGAGAAGGCGGGAGGAGCTCAAAAACCAACCGAAATGCAGTTCACTAACATAAGTGTAGTTAACCATGTCCTGGAAATCCGATTCTATTGGGCTGGAAAAGGGACAACGAGGATTCCTGATAGAGGAGTTTATGGTCCACTTATATCAGCTATTTCTGTTTATTCTGATCTTGCAGGAATAGAAGTGCAAACTGGAATTTTTACCTTGAAGCAAATAAAAGCTGCCACCAATCATTTTGATTCTTGTAATAAAATTGGAGAAGGTGGTTTTGGCCCTGTTTATAAGGGTCAATTGGTTGATGGTACTATTGTAGCAATCAAGCAGCTTTCGTCGAAATCAAGGCAGGGAAATCGTGAATTTCTGAATGAGATAGGAATGATCTCTTGCTTGCAACACCCAAATCTAGTCAAGCTCCATGGATGCTGTATTGAAGGGGACCAATTGCTGTTGGTGTATGAATATTTGGAAAACAATAGTCTTGCCCGAGCACTATTTGGTCCAGATCGCAGTCGGCTTAACCTAGGTTGGCCAACTAGGCTTAGAATATGTATCGGTATAGCAAAAGGCTTAGCATATCTCCATGAGGAATCGAGCCTCAAAATTGTTCATAGAGACATCAAAGCTACTAATGTGCTACTGGACGGTGAACTGAATCCTAAAATATCTGATTTCGGTTTGGCTAAGCTCGACGATGAGGAGAAGACTCATATCACTACTAGAGTGGCTGGGACCATAGGATATATGGCTCCAGAATACGCACTTTGGGGTTATTTGACCTACAAAGCAGATGTTTACAGTTTCGGAGTTGTGGCCTTGGAAATTATCAGCGGAAGAAGCAACAATGATTATGTACCAAGTGAAACTTGTGTTTGCCTTCTAGACTGGGCCTGTCACTTGCAACAATCTGGGAACCTCATGGAGCTGGTAGATGAGAAGTTGAGGTCAGAAATCGACACGAAAGAAGCGGAAAACGTGGTGAAAATAGCCCTTCTTTGCACCAATGCTTCACCATCGATAAGGCCTGCAATGTCGGAAGTGGTGAATATGCTCGAAGGTCGGATGAAAATTCCAGACCTGATCCCAGAACCGAGCAGTTATAATGAAGATCTGAGGTTCAAGGCAATGAGAGATATGCGTAGACAGCAACAACACAGCCAAAGCCTTAGTGAAAGCCAAACCCAAAACTCCACAATGCAAACATGTGAGTCTTCCTCTACATCTGGAAATGAGTTCTATAATATTAACCCAAAGTCGAGATCATCAACAACTTGA 2901 40.71 MMVAKSFFVFIFLVVDCFMFFRFANSKVPQEEVDVLQQITRTLGAVYWKFNSDSCVVEMFGVTEKSPRGSETIIDCDCSIENSTFCHVVRIELKNHNLPGVLPPEILKLPYLQVVDFAYNYLHGNIPQEWASTRLTTISLLVNRLSGEISDALGNITTLTSLNLEGNQFNGAIPSQLGRLSNLQYLLLSSNQLTGTIPTTFAGLKNLTDFRINDNNLNGSIPEFIKNWTLLKRLELHASGLQGPIPPKISLLRNLQELRISDINGPKQDFPELTNMTGMVRLVLRNCNIAGKVPSYLWTLPVMEMLDVSFNQLTGEIPEDINMERIRFLFLTSNMLSGNLPESILKDGTNVDLSYNNLTWQGPEHHACRKNLNMNLNLFRSSSTSNTLQESLPCLKDSICSKYSKCWFVNSGGNDLTMEVNNRNILYNGDADVEGGTAKFYIDRDSYWGLSSTGDFMDDFDYQNTRYTLSLPSSNLSELYSTARRSPITLTYFHHCLDNGNYSVTLHFAELQFTNDKTYTSLGRRKFDIYIQDRLVLENFDIDEKAGGAQKPTEMQFTNISVVNHVLEIRFYWAGKGTTRIPDRGVYGPLISAISVYSDLAGIEVQTGIFTLKQIKAATNHFDSCNKIGEGGFGPVYKGQLVDGTIVAIKQLSSKSRQGNREFLNEIGMISCLQHPNLVKLHGCCIEGDQLLLVYEYLENNSLARALFGPDRSRLNLGWPTRLRICIGIAKGLAYLHEESSLKIVHRDIKATNVLLDGELNPKISDFGLAKLDDEEKTHITTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVALEIISGRSNNDYVPSETCVCLLDWACHLQQSGNLMELVDEKLRSEIDTKEAENVVKIALLCTNASPSIRPAMSEVVNMLEGRMKIPDLIPEPSSYNEDLRFKAMRDMRRQQQHSQSLSESQTQNSTMQTCESSSTSGNEFYNINPKSRSSTT 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20676044 20688525 - MELO3C002686.2.1 Cme12g01256 344473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01256 966 Gene3D Phosphorylase Kinase; domain 1 598 697 - -
Cme12g01256 966 MobiDBLite consensus disorder prediction 920 966 - -
Cme12g01256 966 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 586 943 - -
Cme12g01256 966 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 75 546 - -
Cme12g01256 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672|GO:0006468
Cme12g01256 966 Gene3D - 405 597 - -
Cme12g01256 966 CDD STKc_IRAK 628 895 - -
Cme12g01256 966 ProSiteProfiles Protein kinase domain profile. 622 897 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01256 966 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 586 943 - -
Cme12g01256 966 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 75 546 - -
Cme12g01256 966 MobiDBLite consensus disorder prediction 924 966 - -
Cme12g01256 966 Gene3D Transferase(Phosphotransferase) domain 1 698 901 - -
Cme12g01256 966 Pfam Malectin domain 406 594 IPR021720 -
Cme12g01256 966 SUPERFAMILY Protein kinase-like (PK-like) 606 917 IPR011009 -
Cme12g01256 966 Gene3D Ribonuclease Inhibitor 198 265 IPR032675 -
Cme12g01256 966 SMART serkin_6 622 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01256 966 Pfam Protein tyrosine and serine/threonine kinase 626 893 IPR001245 GO:0004672|GO:0006468
Cme12g01256 966 Gene3D Ribonuclease Inhibitor 266 394 IPR032675 -
Cme12g01256 966 Pfam Leucine rich repeat 158 217 IPR001611 GO:0005515
Cme12g01256 966 SUPERFAMILY L domain-like 77 319 - -
Cme12g01256 966 Gene3D Ribonuclease Inhibitor 38 197 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g00510 Cme-Chr7:4228632 Cme12g01256 Cme-Chr12:20676044 0 dispersed
Cme07g00511 Cme-Chr7:4240156 Cme12g01256 Cme-Chr12:20676044 0 dispersed
Cme07g01343 Cme-Chr7:18904904 Cme12g01256 Cme-Chr12:20676044 0 dispersed
Cme12g01256 Cme-Chr12:20676044 Cme07g00504 Cme-Chr7:4173782 1.06E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65307 PF07714 PK_Tyr_Ser-Thr 4.30E-49 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01256 - - csv:101204874 1787.7