Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01261 GACAAAGAAACTTTTGTTCAACTATGCACCATTTTACGCTCTTCTTCAGCTTATCCACCGATCTTCATACACTCTTCTACCACTACCAAATCTCCCACTCAAATCTCCTCAACTATGACTTCCGGTACCAGAATGCCCACTTGGAAGGAAAGGGAAAACAACAAGCGTCGTGAGAGGCGTCGTCGTGCCATCGCCGCTAAGATCTTTCTTGGCTTGCGAATGTACGGAAACTACAAGCTTCCTAAGCACTGCGACAATAATGAAGTCCTTAAAGCCCTCTGTGATGAAGCTGGATGGACTGTCGAAGAAGACGGCACTACCTATCGGAAGGGTTGCAAGCCTGTGGAACGCAATATCATGGGTGGGTCAGCTTCTGGAAGTCCATGTTCATCTTATCAGCCGAGCCCACGTGCATCTTATAACCCAAGTCCTGCGTCTTCTTCCTTCCCAAGCCCCAAATCTTCCCGTTACGCCATGAATAGCAATGACAATGGTACTGATCCCAATTCCCTCATCCCATGGCTGAAGAACCTCTCTTCGGGTTCATCATCAGCTTCCTCCAGGCTGCCTCATCATCTTTTTATTAATTGTGGCTCCATAAGTGCACCCGTCACCCCTCCATCAAGTTCCCCAACTGCTCGAACACCCAGAAAACCAAATGATTGGGACAATCATCCAGCAGTTGCTCCTGCTTGGGCTGCACAGCGCTTCTCATGTTTGCCAACATCGACCCCACAAAGCCCTGGGCGTCAGGTGTTGGCTGATCCAGCATGGCTTGATAGTATACGGATTCCTCAAAGTGGACCATCATCTCCAACCTTCAGCCTTGTAGCAAGAAATCCTTTTGGATTCAAGGAGGCAATGTCTGCTGGAGTGTCTCGTAATTGGACTCCTACACAGAGCGGAACATGCTCGCCCACAGTTGCTGCAGGCATTGATCATACTTCAGACGTTCCTATGACAGATGGAACTGCAACAGACTTTGCCTTCGGGAGTTGTTCAATTGGGTTGGTGAAGCCTTGGGAAGGAGAGAGAATTCACGAGGAATGCATCTCTGATGATCTTGAACTTACACTTGGGAATTCAAGTACAAGGTAA 1098 48.45 DKETFVQLCTILRSSSAYPPIFIHSSTTTKSPTQISSTMTSGTRMPTWKERENNKRRERRRRAIAAKIFLGLRMYGNYKLPKHCDNNEVLKALCDEAGWTVEEDGTTYRKGCKPVERNIMGGSASGSPCSSYQPSPRASYNPSPASSSFPSPKSSRYAMNSNDNGTDPNSLIPWLKNLSSGSSSASSRLPHHLFINCGSISAPVTPPSSSPTARTPRKPNDWDNHPAVAPAWAAQRFSCLPTSTPQSPGRQVLADPAWLDSIRIPQSGPSSPTFSLVARNPFGFKEAMSAGVSRNWTPTQSGTCSPTVAAGIDHTSDVPMTDGTATDFAFGSCSIGLVKPWEGERIHEECISDDLELTLGNSSTR 365
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20706393 20709284 - MELO3C002681.2.1 Cme12g01261 344478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01261 365 PANTHER BES1/BZR1 HOMOLOG PROTEIN 4 24 365 - -
Cme12g01261 365 MobiDBLite consensus disorder prediction 116 165 - -
Cme12g01261 365 MobiDBLite consensus disorder prediction 203 225 - -
Cme12g01261 365 Pfam BES1/BZR1 plant transcription factor, N-terminal 41 179 IPR008540 -
Cme12g01261 365 MobiDBLite consensus disorder prediction 25 47 - -
Cme12g01261 365 MobiDBLite consensus disorder prediction 123 165 - -
Cme12g01261 365 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 24 365 IPR033264 GO:0003700|GO:0006351|GO:0009742
Cme12g01261 365 MobiDBLite consensus disorder prediction 25 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme07g01358 Cme-Chr7:19092023 Cme12g01261 Cme-Chr12:20706393 2.88E-133 dispersed
Cme12g01261 Cme-Chr12:20706393 Cme07g01472 Cme-Chr7:20497400 1.99E-15 dispersed
Cme12g01261 Cme-Chr12:20706393 Cme03g01975 Cme-Chr3:27612904 1.05E-47 transposed
Cme12g01261 Cme-Chr12:20706393 Cme08g00821 Cme-Chr8:5434941 5.65E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42328 PF05687 BES1_N 7.00E-66 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01261 - - csv:101204637 592.423