Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01264 ATGGCTGCCGCTGCGATTTTCTCGTCTTTACGAAGGAGGAGATCGCCGTCGTTGGAGGCTTTTTTGGCCCCCGTTGACCTATCCGATGTGGCTTTAGTTCAAACCTTGGCGATAGTGGCGACGGAGCTTGTTTCTCGATTTTCAGAGAAGTCTTTCTTCTTCCAGCGAAGGAATTCGCGTTCTCTGATAAGAAAATTGGAGGTTTGTCTAGTCTTTTTGGAGTTTTTGAAGGAAACTGACGCGAATTTGCCTCACACGGCTTTACTCTGTTTGAAGGAGCTTTATTTGTTGTTGTATCGGTCTAAGATACTTCTTGATTATTGCTCTGAATCTAGTAAGTTGTGGCTGTTACTTCAGAACCACTCGATTTCGGGGCATTTCAATGATTTGAATTTGGAGTTGTTGACATTTTTTGATGTTTTTCCTATTGAGGAAGTTGAATTGGGGGCGGATGTTAGAGAGCAGGTTGAGCTTTTGCAGAAGCAGTTGAGAAGGACTAGACTGTTTGTTGATGAACGTGATGAGGTTTTGAGGACTTGTTTCCTTTCGTTTCTTGATGAGTTTGAGAACGGGAGGCTTCCTAATCCTAGGGAAATGAGGGAGTTTTTTGTGGATAAGTTGAAGATTTGGAATGCGAAGAGTTGTAGAGCTGAAATTGAGTTCTTGGAGGAGCAGATTGTCAATCATGAAGGCGATATTGAGCCCACAGTGGCGGTGTTAAACGGTTTTGTTGCCTTTACTAGATATAGTAGGTTTTTCCTCTTTGGATTTGAGGAAGATGATGTTGATTCAGGTACATCAAATCAGAAAAAGCTGAAGAAGAACTTGATTACTCAGGAGATTGCCGAGACATTTCTAACAATTCCGAGGGACTTCTGCTGCCCAATATCACTGGATTTGATGAAAGATCCAGTGACCATTTCTACAGGTCAGACATACGATCGCAGCTCGATTACTAGATGGATGGAAGAAGGGCACAACACTTGTCCAAAGACTGGGCAAATGCTTATTCATACACGCCTTGCTCCCAACCGCGCATTAAGGAATTTGATTGTGCAATGGTGCATTGCACATGGAGTTCCTTATGATCCACCAGATGGGATGGATGCATCTGCAGAGAGCTATGCAATAGCTTCTCCCACACGAGCTGCACTAGAAGCCAATAGAGCAACAGCTTTGATCCTTATTCAACAGTTATCCATTGGATCACAAGATGCAAAGACGATTGCTGCTCGTGAGATTCGTTTGTTAGCCAAAACAGGGAAAGAGAACCGTGCTTTCATTGCAGAAGCCGGTGCCATCCCCCATCTTCAAAAGTTGCTGGCTTCCCCAAACGCAGTTGCACAGGAGAATTCTGTGACTGCTATGCTTAACCTCTCCATATATGACAAGAACAAAAGTTTGATAATGAGTGAGGTAGGGTGTTTACGAGCAATAACTGAAGTGTTAAGATTTGGACATAGTACAGAAGCACGGGAGAATGCCGCAGCTACGTTATTCAGCCTGTCTGCAGTTCATGACTACAAGAAGAGAATAGCAGAAGAAGGTGGTGCAGTTGAAGCCTTGGCTGGGTTGTTGAGAGATGGTACCCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTATTTAATCTCTCAACCCACACGGATAACTGCGTTCAGATGATAGAGGCCGGGGCAGTAACAGCTCTTGTAGGAGCATTGGGGAATGAAGGTGTTGCTGAGGAAGCAGCTGGTGCATTGGCTTTGATCGTTAGACAGCCTGTTGGGGCCGAAGCAGTCGCCAAAGAGGAGAGAGCTGTAGCAGGATTGATAGCAATGATGCGATGTGGTACACCAAGAGGTAAAGAGAATGCAGTAGCAGCTTTGCTTGAGTTATGCCGAAGTGGTGGTGCTGCCACAACCGAACAAGTGTTCAAGGCTCCCGCTTTGGCTGGCTTGCTCCAAACACTCCTATTCACCGGTACGAAGCGAGCGCGAAGAAAGGCTGCTTCACTAGCTAGAGTGTTCCAAAGATGTGAGCATGTCACAATGCATTACGGCGGATTGGGGGTTGGTTATGCCTATGCAAGTAACTCAGCTTCAAGCAGAGAAACAAGCTTTGCTAGCGAGGTATCTGTGCCGATATCTATCTCGGTACCTGTTGTATAA 2148 45.34 MAAAAIFSSLRRRRSPSLEAFLAPVDLSDVALVQTLAIVATELVSRFSEKSFFFQRRNSRSLIRKLEVCLVFLEFLKETDANLPHTALLCLKELYLLLYRSKILLDYCSESSKLWLLLQNHSISGHFNDLNLELLTFFDVFPIEEVELGADVREQVELLQKQLRRTRLFVDERDEVLRTCFLSFLDEFENGRLPNPREMREFFVDKLKIWNAKSCRAEIEFLEEQIVNHEGDIEPTVAVLNGFVAFTRYSRFFLFGFEEDDVDSGTSNQKKLKKNLITQEIAETFLTIPRDFCCPISLDLMKDPVTISTGQTYDRSSITRWMEEGHNTCPKTGQMLIHTRLAPNRALRNLIVQWCIAHGVPYDPPDGMDASAESYAIASPTRAALEANRATALILIQQLSIGSQDAKTIAAREIRLLAKTGKENRAFIAEAGAIPHLQKLLASPNAVAQENSVTAMLNLSIYDKNKSLIMSEVGCLRAITEVLRFGHSTEARENAAATLFSLSAVHDYKKRIAEEGGAVEALAGLLRDGTPRGKKDAVTALFNLSTHTDNCVQMIEAGAVTALVGALGNEGVAEEAAGALALIVRQPVGAEAVAKEERAVAGLIAMMRCGTPRGKENAVAALLELCRSGGAATTEQVFKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCEHVTMHYGGLGVGYAYASNSASSRETSFASEVSVPISISVPVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20726204 20729147 - MELO3C002678.2.1 Cme12g01264 344481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01264 715 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Cme12g01264 715 ProSiteProfiles U-box domain profile. 287 361 IPR003613 GO:0004842|GO:0016567
Cme12g01264 715 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 17 11 696 - -
Cme12g01264 715 SUPERFAMILY RING/U-box 277 362 - -
Cme12g01264 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 517 559 IPR000225 GO:0005515
Cme12g01264 715 Pfam U-box domain 288 358 IPR003613 GO:0004842|GO:0016567
Cme12g01264 715 Gene3D - 377 512 IPR011989 -
Cme12g01264 715 Gene3D - 513 667 IPR011989 -
Cme12g01264 715 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Cme12g01264 715 PANTHER U BOX DOMAIN-CONTAINING 11 696 - -
Cme12g01264 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 362 IPR013083 -
Cme12g01264 715 SMART Ubox_2 291 354 IPR003613 GO:0004842|GO:0016567
Cme12g01264 715 Coils Coil 212 232 - -
Cme12g01264 715 SMART arm_5 463 504 IPR000225 GO:0005515
Cme12g01264 715 SMART arm_5 587 627 IPR000225 GO:0005515
Cme12g01264 715 SMART arm_5 421 461 IPR000225 GO:0005515
Cme12g01264 715 SMART arm_5 547 585 IPR000225 GO:0005515
Cme12g01264 715 SMART arm_5 506 546 IPR000225 GO:0005515
Cme12g01264 715 CDD RING-Ubox_PUB 292 334 IPR045210 -
Cme12g01264 715 SUPERFAMILY ARM repeat 394 669 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme03g00268 Cme-Chr3:3445376 Cme12g01264 Cme-Chr12:20726204 3.26E-122 dispersed
Cme08g02117 Cme-Chr8:26958988 Cme12g01264 Cme-Chr12:20726204 2.26E-132 dispersed
Cme10g00515 Cme-Chr10:3327533 Cme12g01264 Cme-Chr12:20726204 1.28E-80 dispersed
Cme11g01284 Cme-Chr11:19590109 Cme12g01264 Cme-Chr12:20726204 7.51E-94 dispersed
Cme12g00199 Cme-Chr12:2053105 Cme12g01264 Cme-Chr12:20726204 4.12E-84 dispersed
Cme12g01264 Cme-Chr12:20726204 Cme12g01706 Cme-Chr12:23910004 5.29E-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01264 - - csv:101204151 1279.62