Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cme12g01272 | ATGTTGCATAACGCCATTAGTTTCCTTTCCATTGATCTTTTCACGGGGCTAGTTCGAATGAAGAAGATTCACACTCCAGTAGGAATTGCACTTCAATTGGAAGATTCGGACTCTGGGTTGCTTGTGTTTGCGGTTGCTTTTCCAGTTTCTTATGTAGCGGTTTGGGTTGATTTGGAGTTGCAGAATCTGGGTTCTCCGAAGAAAGGGGAAGTGAGAAACAAGATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCTGTCGGGGTTGATGGCAATGGGGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAAAGTCTGTGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGTTGTGGTTCTCCATTTGATGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACTATGGCATCTCATCTCAGTCATTCTCAGGACGTTGGTGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAACTGAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAACGGCCTGCCGTGAAGACTGAACAGGAAGCTCAAATTCCTGTCCATCAACAAATGGAAGAGAAACAGATTTCAGAGGAGGCTGCGGTTACACACTCATTTTCTTCGGTTTATCCAATTCCTTCCAGCAGATTAACACCATACAGAATCGTGATAATCATGCGATTGATCATTCTAGCGCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGAGACACATTCATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAATTCTCTATTGAACCTCGAGCTCCTGAGTTTTACTTCTCTCAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGCAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCATCCTGGAATGATTCAGGTTTTTCTTGGAAATACCGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCTAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCTGCAGTCCTCACAAACGCCCCCTTCATTCTCAACCTTGATTGTGATCATTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGTAGAGATGTATGCTATGTTCAATTTCCTCAGAGATTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGGATCCAGGGACCAGTATACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTACGGACCTCCTACACTGCCTAGCTTATCTAAGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGATTTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCGGGGAAATAGATAATTATGACGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATCGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCCCCAATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGCAGACATTGTCCATTATGGTATGGATTCGCAGGCGGACGACTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTTGTTGCCTACTGCTCGTTGCCTGCCATCTGCCTGTTGACAGGGAAATTCATCATACCAACGCTCTCAAACCTAGCAAGTACCCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATTGAAGATATATGGCGTAACGAACAATTTTGGGTCATAGGAGGTGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGCTGGCCGGCATTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGACGCTGAGTTCGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCCCCTACAACTCTTATTGTCGTTAACATGGTAGGTGTCGTTGCTGGATTTTCTGATGCACTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACAGGACGCCTACCATTGTTGTTTTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAGAGCTGCATTGCAATAGATTGTTGA | 3174 | 43.95 | MLHNAISFLSIDLFTGLVRMKKIHTPVGIALQLEDSDSGLLVFAVAFPVSYVAVWVDLELQNLGSPKKGEVRNKMMVSDVPICHTCGEPVGVDGNGEVFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPAVKTEQEAQIPVHQQMEEKQISEEAAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLGEIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC | 1057 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 20818729 | 20834340 | + | MELO3C002672.2.1 | Cme12g01272 | 344489 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cme12g01272 | 1057 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 76 | 1057 | - | - | |
Cme12g01272 | 1057 | Pfam | Zinc-binding RING-finger | 81 | 132 | IPR027934 | - | |
Cme12g01272 | 1057 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 67 | 154 | IPR013083 | - | |
Cme12g01272 | 1057 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 481 | 621 | IPR029044 | - | |
Cme12g01272 | 1057 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] | 76 | 1057 | - | - | |
Cme12g01272 | 1057 | Pfam | Cellulose synthase | 329 | 1047 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Cme12g01272 | 1057 | ProSiteProfiles | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 626 | 655 | IPR017896 | - | |
Cme12g01272 | 1057 | MobiDBLite | consensus disorder prediction | 196 | 218 | - | - | |
Cme12g01272 | 1057 | SUPERFAMILY | RING/U-box | 71 | 147 | - | - | |
Cme12g01272 | 1057 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 343 | 850 | IPR029044 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cme11g02396 | Cme-Chr11:30838713 | Cme12g01272 | Cme-Chr12:20818729 | 0 | dispersed | |
Cme12g01272 | Cme-Chr12:20818729 | Cme11g00612 | Cme-Chr11:6922945 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cme12g01272 | K10999 | - | csv:101208988 | 1999.17 |