Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01272 ATGTTGCATAACGCCATTAGTTTCCTTTCCATTGATCTTTTCACGGGGCTAGTTCGAATGAAGAAGATTCACACTCCAGTAGGAATTGCACTTCAATTGGAAGATTCGGACTCTGGGTTGCTTGTGTTTGCGGTTGCTTTTCCAGTTTCTTATGTAGCGGTTTGGGTTGATTTGGAGTTGCAGAATCTGGGTTCTCCGAAGAAAGGGGAAGTGAGAAACAAGATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCTGTCGGGGTTGATGGCAATGGGGAGGTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAAAGTCTGTGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGTTGTGGTTCTCCATTTGATGAGAACTTGCTGATGGATGCTGATACGAAGAGATCAGGAGATCGAAACACTATGGCATCTCATCTCAGTCATTCTCAGGACGTTGGTGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAACTGAATGATGAATCTGGGAACCCAATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAACAAAAAGAAACGGCCTGCCGTGAAGACTGAACAGGAAGCTCAAATTCCTGTCCATCAACAAATGGAAGAGAAACAGATTTCAGAGGAGGCTGCGGTTACACACTCATTTTCTTCGGTTTATCCAATTCCTTCCAGCAGATTAACACCATACAGAATCGTGATAATCATGCGATTGATCATTCTAGCGCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGAGACACATTCATTGACAGATTATCAGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCAATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAATTCTCTATTGAACCTCGAGCTCCTGAGTTTTACTTCTCTCAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGCAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAATCCACGTGACCATCCTGGAATGATTCAGGTTTTTCTTGGAAATACCGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCTAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCTGCAGTCCTCACAAACGCCCCCTTCATTCTCAACCTTGATTGTGATCATTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGTAGAGATGTATGCTATGTTCAATTTCCTCAGAGATTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACAGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGGATCCAGGGACCAGTATACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTACGGACCTCCTACACTGCCTAGCTTATCTAAGACATCCTCATCATCCTGCTCTTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGATTTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCGGGGAAATAGATAATTATGACGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATCGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCAGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCTTGAGGCCAGCATTCAAAGGATCAGCCCCAATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTTGGATCTGTTGAGATTTTTCTCAGCAGACATTGTCCATTATGGTATGGATTCGCAGGCGGACGACTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACCTCCCTCCCTCTTGTTGCCTACTGCTCGTTGCCTGCCATCTGCCTGTTGACAGGGAAATTCATCATACCAACGCTCTCAAACCTAGCAAGTACCCTTTTTCTCGGTCTCTTCTTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATTGAAGATATATGGCGTAACGAACAATTTTGGGTCATAGGAGGTGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGCTGGCCGGCATTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGACGCTGAGTTCGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCCCCTACAACTCTTATTGTCGTTAACATGGTAGGTGTCGTTGCTGGATTTTCTGATGCACTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTTTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACAGGACGCCTACCATTGTTGTTTTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAGAGCTGCATTGCAATAGATTGTTGA 3174 43.95 MLHNAISFLSIDLFTGLVRMKKIHTPVGIALQLEDSDSGLLVFAVAFPVSYVAVWVDLELQNLGSPKKGEVRNKMMVSDVPICHTCGEPVGVDGNGEVFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPAVKTEQEAQIPVHQQMEEKQISEEAAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKTSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLGEIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPLRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC 1057
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20818729 20834340 + MELO3C002672.2.1 Cme12g01272 344489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01272 1057 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 76 1057 - -
Cme12g01272 1057 Pfam Zinc-binding RING-finger 81 132 IPR027934 -
Cme12g01272 1057 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 154 IPR013083 -
Cme12g01272 1057 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 481 621 IPR029044 -
Cme12g01272 1057 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 76 1057 - -
Cme12g01272 1057 Pfam Cellulose synthase 329 1047 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cme12g01272 1057 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 626 655 IPR017896 -
Cme12g01272 1057 MobiDBLite consensus disorder prediction 196 218 - -
Cme12g01272 1057 SUPERFAMILY RING/U-box 71 147 - -
Cme12g01272 1057 SUPERFAMILY Nucleotide-diphospho-sugar transferases 343 850 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme11g02396 Cme-Chr11:30838713 Cme12g01272 Cme-Chr12:20818729 0 dispersed
Cme12g01272 Cme-Chr12:20818729 Cme11g00612 Cme-Chr11:6922945 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01272 K10999 - csv:101208988 1999.17