Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01283 ATGGAGAAAAAGGGAAGTATTTTAATGCAAAGATACGAACTTGGTAGAATGCTTGGACAAGGCACATTTGCTAAAGTCTACCATGCTCGTAATCTCAAGTCTGGCCAGAGTGTGGCTATTAAGATCATTGATAAAGAGAAAGTTCTACGTGTTGGGTTGATCGACCAAATCAAAAGGGAAATCTCTGTGATGCGGCTTGTTCGTCATCCTAATGTGGTGCAACTTTATGAGGTTATGGCCAGCAGGACCAAAATCTATTTTGCTATGGAGTATGTTAAAGGTGGGGAGCTTTTCAATAAAGTGGCTAAAGGAAAGCTCAAGGAAGATGCGGCTCGTAAGTATTTTCAACAGCTTATTGGGGCTGTTGATTATTGCCATAGTCGTGGTGTGTATCATAGAGATATTAAACCTGAAAATCTCCTTCTTGATGAGTATGGGAATCTTAAGATTTCGGATTTTGGGTTGAGTGCTTTGGCTGAATCTAGAAGACAAGATGGGCTTCTTCATACAACTTGTGGTACCCCTGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTACGACGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTCCTGTTTGTTCTTCTTGCTGGTTATCTCCCTTTCCACGATCCAAATCTAATGGAAATGTACAGAAAAATCTCAAGAGGAGAATTCAAATGCCCTCAATGGTTTCCCCCAGAAGTTCGAAAGCTTCTTTCAAGAATCCTGGACCCAAGTCCTCACACCAGAATAAACATGGCCAAACTCATGGAAAATTCCTGGTTCAAGAAAGGTTTCAAAGCAAATGTAACAACTCCAAAACAACTTCAAAACAATGAAGACATGTCGTCCGTGAGCGACGTTCATTCCGCTTTCCTCGACATTAGTTCGGAAGGAGGAAGTTCTGTTAGCAACACCAATGAGAGTGGAAAACCACCAACAGCTACTAGAGCTCCAATAAGAAATAATTCCTTCAATGCATTTGACATCATATCTCTCTCACCAGGCTTTGATCTCTCAGGTCTATTTGAGAGTGATGTGAGTGAAAGACCACAGTCTCGTTTCACAACGAAGAAACCGGCTTCAGCTATCGTGTCGAAGTTCGAAGAGATAGCGGAAATGGAAAGGTTTCAGGTATTGAAGAAAGATGGGATTGTGAAACTACAAGGGAGCAAACAGGGGAGGAAAGGACAATTGGCTATAGATGCTGAGATATTTGAAGTAACACCTTCTTTTTTTGTGGTGGAAGTGAAGAAAACTGCTGGAGATACATTGGAATATAGGCAGTTTTATGACAAAGATATGAGACCTTGCCTTAAAGATATTGTATGGACTTGGGAAGGAAATGAGCAGCAGCAGCAACAACCACAAATTGTTTAG 1392 41.38 MEKKGSILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVKGGELFNKVAKGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEYGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPQWFPPEVRKLLSRILDPSPHTRINMAKLMENSWFKKGFKANVTTPKQLQNNEDMSSVSDVHSAFLDISSEGGSSVSNTNESGKPPTATRAPIRNNSFNAFDIISLSPGFDLSGLFESDVSERPQSRFTTKKPASAIVSKFEEIAEMERFQVLKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFFVVEVKKTAGDTLEYRQFYDKDMRPCLKDIVWTWEGNEQQQQQPQIV 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 20898876 20901275 - MELO3C002661.2.1 Cme12g01283 344500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01283 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Cme12g01283 463 MobiDBLite consensus disorder prediction 301 323 - -
Cme12g01283 463 CDD CIPK_C 330 444 - -
Cme12g01283 463 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 460 - -
Cme12g01283 463 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Cme12g01283 463 Pfam NAF domain 327 385 IPR004041 GO:0007165
Cme12g01283 463 Gene3D Kinase associated domain 1, KA1 325 449 - -
Cme12g01283 463 Gene3D Transferase(Phosphotransferase) domain 1 3 321 - -
Cme12g01283 463 PANTHER - 2 460 - -
Cme12g01283 463 SUPERFAMILY Protein kinase-like (PK-like) 8 324 IPR011009 -
Cme12g01283 463 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165
Cme12g01283 463 CDD STKc_SnRK3 11 265 - -
Cme12g01283 463 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01283 463 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01283 463 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme02g01072 Cme-Chr2:15744556 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme05g01830 Cme-Chr5:27161860 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme08g00116 Cme-Chr8:871731 Cme12g01283 Cme-Chr12:20898876 2.31E-171 dispersed
Cme08g02122 Cme-Chr8:27131707 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme11g01443 Cme-Chr11:21351973 Cme12g01283 Cme-Chr12:20898876 0 dispersed
Cme12g01159 Cme-Chr12:19714735 Cme12g01283 Cme-Chr12:20898876 5.66E-155 dispersed
Cme11g02310 Cme-Chr11:30160747 Cme12g01283 Cme-Chr12:20898876 5.27E-46 transposed
Cme12g01283 Cme-Chr12:20898876 Cme08g00218 Cme-Chr8:1466632 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65312 PF00069 Pkinase 1.00E-72 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01283 K07198 - csv:101206082 877.856