Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01293 ATGATGGGAGAGAGAAAACATGATAAGAATAATGAAGATCAACATGGAGGTGGAATTAAGCTCTTTGGGGCAACAATTATGCTACAAAATAAAAGGCAAATCATCAAAGAAGAAGAAGAAGAAGAAGAAGCCAATAAATCAGATCAACAAACACTAGAAAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGTATGGATACCAAATTTTGTTACTTCAATAATTACAATGTTAATCAACCTAGGCATTTCTGTAAGGGCTGCCAGAGGTATTGGACTGCCGGCGGGGCCCTTCGCAACGTTCCCATCGGAGCCGGCCGTCGCAAAACCAAGCCTCCTTGTCGAACCTTTGGTGGGTTGCCGGAGAATTGTGTCTTTGATTCTTCAGGGATTGTCACGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGAAGTGGCATGCCGTCGCTGCCGCCGCCACACAAGGTGGTTTTCGGCAAATTTTACCGGTAAAGAGGCGGAGGGATTGTCAAGATGGTCAAACTTGTTGA 537 45.25 MMGERKHDKNNEDQHGGGIKLFGATIMLQNKRQIIKEEEEEEEANKSDQQTLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCRTFGGLPENCVFDSSGIVTVQPFELEGMVEKWHAVAAAATQGGFRQILPVKRRRDCQDGQTC 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21014709 21015434 + MELO3C002649.2.1 Cme12g01293 344510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01293 178 ProSitePatterns Zinc finger Dof-type signature. 62 98 IPR003851 GO:0003677|GO:0006355
Cme12g01293 178 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 15 171 - -
Cme12g01293 178 MobiDBLite consensus disorder prediction 1 15 - -
Cme12g01293 178 Coils Coil 28 55 - -
Cme12g01293 178 MobiDBLite consensus disorder prediction 1 21 - -
Cme12g01293 178 ProSiteProfiles Zinc finger Dof-type profile. 60 114 IPR003851 GO:0003677|GO:0006355
Cme12g01293 178 PANTHER CYCLIC DOF FACTOR 2 15 171 IPR045174 GO:0003700|GO:0006355
Cme12g01293 178 Pfam Dof domain, zinc finger 58 113 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cme08g00224 Cme12g01293 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme10g00408 Cme-Chr10:2599811 Cme12g01293 Cme-Chr12:21014709 9.15E-36 dispersed
Cme12g01293 Cme-Chr12:21014709 Cme12g01987 Cme-Chr12:25615555 5.95E-37 dispersed
Cme12g01293 Cme-Chr12:21014709 Cme08g00224 Cme-Chr8:1511220 3.63E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42332 PF02701 zf-Dof 6.70E-32 No_clan Cme TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01293 - - csv:101204978 356.681