Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01317 GAAAATACTTTAAAAACAAAAATTAAAAGGAAAAGAAAAACTTTTTTAACAATTTATTATTCTTCATGCTCTCTCCAATGGCAGCTGTCCCCGGGTCTGAGCAGAGGAGGGGCTCCGAAACAAAGCTCTCATCCTTCCTTCTTCCTTGAAAACTCCTATTCTCCTCTTTTCCCTTTTCCCCCTTTTCCCCTTCATATATTCATCTTCATCCTCAAAAACCTAAACCCTTTCATTTCCATTTCCACTCACAGAGAAGCACCAACAATGCTTCTCCACCCACTTTTTCTTCTCTTCTTCTTCTTCACCTTCTTCTCAAACCCTTCTCTTCTTTCCTTCTCTCTATCCCAAGAAGGCCTCTATCTCCACACCATCAAGCTTTCTCTCGACGACCCAGATTCTGCTCTCCGCTCATGGAACGACCGCGACGATACTCCCTGTTCCTGGTTCGGCGTCTCTTGCGACCCACAAACCAACTCCGTCCACTCTCTCGACCTTTCCAACACTAACATCGCCGGCCCATTTCCTTCCCTACTTTGCCGCCTCCAGAATCTTTCATTCCTCTCCCTTTACAACAATTCCATCAACATGTCCCTTCCCTCTGTTATTTCAAACTGTACCAGTCTCCACCATCTCGACCTCTCTCAGAATCTCCTCACCGGCGAGCTTCCGGCCTCGATTTCTGATCTCCCCAACCTTCGTTACTTGGATTTGACTGGGAATAACTTCTCCGGCGACATTCCGGAGAGTTTCGCTCGGTTTCAGAAGTTGGAAGTTCTGTCACTTGTTTATAACCTTCTCGATGGGCCTATGCCGGCGTTTCTCGGCAACATTACGTCGTTGAAGATGTTGAACCTGTCTTATAACCCTTTTGAGCCGAGTCGGATCCCGCCGGAGTTTGGGAATTTGATGAATCTTGAGGTGCTCTGGCTGACTCAGTGTAATTTGGTTGGGGAAATTCCGGAGTCTCTCGGTCGGTTGAAGCGGCTTACTGATTTGGACTTGGCGTTGAATAATCTTGACGGATCGATTCCGGAGTCGCTCATGGAGTTGAGTAGTGTGGTTCAGATTGAGTTGTATAATAACTCGTTAACGGGAGAGTTGCCTTCTGGGTTTTCGAAACTGACTTCATTGCGACTGTTTGACGCTTCGATGAATGGTTTGACTGGGGAGATTCCGGATGAGCTGTGTCAATTGCCTCTTGAGAGTCTTAATCTCTACGAGAACAAGTTTGAAGGGAAGTTACCGGAAAGCATTGCCAACTCCCCGGGTCTGTACGAACTCAGACTGTTCGGTAACCGGCTCACCGGTGAGTTACCGTCAAATCTTGGAAAGAACTCGCCAATGAGATGGATTGATGTTTCTAACAACCAGTTTACGGGTAAAATTCCGGGGAATTTATGTGAAAAGGGTGAGTTGGAGGAGCTTCTAATGATCAATAACCAATTTTCCGGCGAGATTCCGGCGAGTTTAGGTTCGTGCGAGAGTCTTACGAGGGTGCGATTGGGTTATAATCAATTTTCCGGCGAAGTACCGGCGGGATTTTGGGGTCTCCCACATGTTTATCTGTTAGAGCTGGTGAGCAACTCGTTTTCTGGGAAGATTTCAGATGCCATTGCCACTGCTAAGAACCTTTCCATTTTCATTATCTCTAAGAACAACTTCACCGGCATGTTACCGGCGGAGATGGGCCGGCTAGAAAACCTTGTGAAGTTGCTAGCAACAGATAACAAACTCAATGGATCATTACCTGAGAGTCTTGCGAATCTTAGGCATCTGTCGAGTTTGGATCTTCGGAATAATAAACTCTCTGGGGAACTTCCTAGTGGAATCAAGTCATGGAAGAATCTCAACGAACTCAATTTAGCTAACAATGAATTCACCGGCGAAATCCCTGAAGAAATCGGAAATTTGCCTGTTCTTAATTACTTAGATCTGTCTGGGAATCTGTTTTATGGGGATGTCCCTCTTGGGTTACAAAATTTGAAGCTCAATCTACTCAATTTATCGAACAATCACTTGTCTGGTGAGCTTCCTCCATTTTTAGCCAAGGAAATCTACAAAAATAGCTTTTTAGGAAATCCAGATTTGTGTGGACATTTTGAAAGTTTGTGCAATAGCAAAGCTGAAGCTAAAAGCCAAGGCTCTCTCTGGTTACTCCGTTCGATCTTCGTCCTTGCTGGTTTCGTGTTTATCGTAGGCGTCATCTGGTTTTATCTCAAATACAGGAAGTTTAAAATGGCAAAGAGAGAAATAGAGAAGAGTAAATGGACATTGATGTCCTTCCACAAGTTGGATTTCAGTGAATATGAGATCTTGGATTGTCTTGATGATGATAACATCATAGGCAGTGGATCTTCTGGTAAAGTTTACAAAGTTGTGCTCAACAATGGTGAGGCTGTTGCAGTGAAGAAGCTGTTTGGAGGATTGAGGAAAGAAGGTGAGAAGGGCGATATCGAGAAAGGTCAAGTTCAAGACAATGCCTTTGAAGCCGAAATTGATACTTTGGGAAAGATTAGGCACAAGAACATCGTGAAATTGTGGTGCTGTTGTGTTACAAGAGACTACAAGCTTTTAGTCTATGAATATATGCCTAATGGAAGCTTGGGAGATTTGCTTCATAGTAGTAAAAAAGGACTGCTTGATTGGCCTACGAGATTTAAGATAGCTTTAGATGCTGCAGAAGGACTTTCTTATCTTCATCACGATTGCGTCCCTCCGATCGTTCATCGAGACGTTAAGTCAAACAATATCTTGTTGGATGGCGATTTTGGAGCACGGTTAGCTGATTTTGGTGTAGCTAAAGTCATTGATTCAACTGGAAAAGGGCCTAAATCCATGTCCGTTATCGCAGGATCTTGTGGTTACATCGCTCCTGAGTATGCTTATACACTCCGAGTGAACGAAAAAAGCGACATATACAGTTTTGGTGTGGTGATTCTCGAGTTAATAACCGGGAGGCTTCCGGTTGATCCAGAATTCGGGGAGAAGGACTTGGTGAAATGGGTGTGTTACACATTGGATCAAGACGGGATCGATCAAGTTATCGACCGGAAACTGGATAGCTGTTACAAAGAAGAAATATGCAGAGTCCTTAACATTGGGTTGCTATGCACCAGCCCTCTACCAATCAACCGTCCATCCATGCGAAAAGTGGTGAAAATGCTACAAGAAGTAGGGGCAGAGAACCAATTGAAAAGCAGCAGTAAAGATGGAAAGTTAACTCCTTACTATTATGAAGATGCATCAGATCAGGGAAGTGTAGCTTAG 3267 44.14 ENTLKTKIKRKRKTFLTIYYSSCSLQWQLSPGLSRGGAPKQSSHPSFFLENSYSPLFPFPPFPLHIFIFILKNLNPFISISTHREAPTMLLHPLFLLFFFFTFFSNPSLLSFSLSQEGLYLHTIKLSLDDPDSALRSWNDRDDTPCSWFGVSCDPQTNSVHSLDLSNTNIAGPFPSLLCRLQNLSFLSLYNNSINMSLPSVISNCTSLHHLDLSQNLLTGELPASISDLPNLRYLDLTGNNFSGDIPESFARFQKLEVLSLVYNLLDGPMPAFLGNITSLKMLNLSYNPFEPSRIPPEFGNLMNLEVLWLTQCNLVGEIPESLGRLKRLTDLDLALNNLDGSIPESLMELSSVVQIELYNNSLTGELPSGFSKLTSLRLFDASMNGLTGEIPDELCQLPLESLNLYENKFEGKLPESIANSPGLYELRLFGNRLTGELPSNLGKNSPMRWIDVSNNQFTGKIPGNLCEKGELEELLMINNQFSGEIPASLGSCESLTRVRLGYNQFSGEVPAGFWGLPHVYLLELVSNSFSGKISDAIATAKNLSIFIISKNNFTGMLPAEMGRLENLVKLLATDNKLNGSLPESLANLRHLSSLDLRNNKLSGELPSGIKSWKNLNELNLANNEFTGEIPEEIGNLPVLNYLDLSGNLFYGDVPLGLQNLKLNLLNLSNNHLSGELPPFLAKEIYKNSFLGNPDLCGHFESLCNSKAEAKSQGSLWLLRSIFVLAGFVFIVGVIWFYLKYRKFKMAKREIEKSKWTLMSFHKLDFSEYEILDCLDDDNIIGSGSSGKVYKVVLNNGEAVAVKKLFGGLRKEGEKGDIEKGQVQDNAFEAEIDTLGKIRHKNIVKLWCCCVTRDYKLLVYEYMPNGSLGDLLHSSKKGLLDWPTRFKIALDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARLADFGVAKVIDSTGKGPKSMSVIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELITGRLPVDPEFGEKDLVKWVCYTLDQDGIDQVIDRKLDSCYKEEICRVLNIGLLCTSPLPINRPSMRKVVKMLQEVGAENQLKSSSKDGKLTPYYYEDASDQGSVA 1088
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21222820 21226503 - MELO3C002627.2.1 Cme12g01317 344534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01317 1088 SUPERFAMILY L domain-like 400 560 - -
Cme12g01317 1088 SUPERFAMILY Protein kinase-like (PK-like) 766 1055 IPR011009 -
Cme12g01317 1088 Gene3D Ribonuclease Inhibitor 422 708 IPR032675 -
Cme12g01317 1088 Gene3D Ribonuclease Inhibitor 273 352 IPR032675 -
Cme12g01317 1088 Gene3D Ribonuclease Inhibitor 114 272 IPR032675 -
Cme12g01317 1088 Gene3D Ribonuclease Inhibitor 353 421 IPR032675 -
Cme12g01317 1088 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 100 1068 - -
Cme12g01317 1088 Pfam Leucine rich repeat N-terminal domain 115 154 IPR013210 -
Cme12g01317 1088 Pfam Leucine Rich Repeat 207 228 IPR001611 GO:0005515
Cme12g01317 1088 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 100 1068 - -
Cme12g01317 1088 ProSiteProfiles Protein kinase domain profile. 775 1058 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01317 1088 Gene3D Transferase(Phosphotransferase) domain 1 863 1081 - -
Cme12g01317 1088 SUPERFAMILY RNI-like 162 671 - -
Cme12g01317 1088 ProSitePatterns Protein kinases ATP-binding region signature. 781 804 IPR017441 GO:0005524
Cme12g01317 1088 Gene3D Phosphorylase Kinase; domain 1 740 862 - -
Cme12g01317 1088 SMART LRR_typ_2 229 252 IPR003591 -
Cme12g01317 1088 SMART LRR_typ_2 589 612 IPR003591 -
Cme12g01317 1088 SMART LRR_typ_2 181 205 IPR003591 -
Cme12g01317 1088 SMART LRR_typ_2 326 350 IPR003591 -
Cme12g01317 1088 SMART LRR_typ_2 374 398 IPR003591 -
Cme12g01317 1088 SMART LRR_typ_2 277 301 IPR003591 -
Cme12g01317 1088 Pfam Leucine rich repeat 590 649 IPR001611 GO:0005515
Cme12g01317 1088 Pfam Leucine rich repeat 230 289 IPR001611 GO:0005515
Cme12g01317 1088 SMART serkin_6 775 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01317 1088 MobiDBLite consensus disorder prediction 1063 1088 - -
Cme12g01317 1088 Pfam Protein kinase domain 778 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01317 1088 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g00206 Cme-Chr4:1518847 Cme12g01317 Cme-Chr12:21222820 0 dispersed
Cme07g01827 Cme-Chr7:23749651 Cme12g01317 Cme-Chr12:21222820 0 dispersed
Cme01g00482 Cme-Chr1:3476964 Cme12g01317 Cme-Chr12:21222820 0 transposed
Cme03g01761 Cme-Chr3:26123660 Cme12g01317 Cme-Chr12:21222820 0 transposed
Cme06g01720 Cme-Chr6:19446849 Cme12g01317 Cme-Chr12:21222820 0 transposed
Cme12g01317 Cme-Chr12:21222820 Cme08g00270 Cme-Chr8:1743543 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65314 PF00069 Pkinase 3.70E-43 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01317 - - csv:101213542 1897.09