Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01341 ATGGAGGAAGATCCTAATTCTTGGTTAAGAAGAACTAATTTTTCTCACACAATATGCTATCGATTAGAGTCCTTAAGTTTGGCTTCCTTTCCTGTCACCACTCAGTCACCTCCCAAACCAGCTGTGCAATCAAAACCGAACCCTTGTTATAATCTAACGAAGCAGAGGTCTTTATCTCCTTCTCCACAAACGAAACTCTCCAGTGCATTTAAGGATGCACGTATCGATCAGAAGCGATTTTCGACTCCACAGCCTCAGAGAAAAGAACCTCTAAAAGAGAAGAGCAAAAGGCTGTTTAGTAAAAGAGCCAAGGTGCAGAATTCCCTCAAGGAAGAGAAGTTAAAACGACCTTTGAGGCATCTTGTCTCTTTTAAAGGCAACGAGAAGTTAAAATTCAAGGACTCTTCTTGGAGTAAGCTTTTTGAGCACGGTGGAGGGAAGGTCACGGCTGTTGAAGCTGTAGACGAATTGTCGATCGACCTGTCTAAGTTGATGTTTGGACATAGATTTGCTTTTGGAGCTCACAGTCGACTTTACCACGGAATTTATGAAGATAAAGTTGTTGCTGCTAAGATGATCAATCTACCAGCCAATGATGAAAATGGCGATCTCGCAGGTCGCTTAGTAAAGCAATTTGGTAGAGAAGTAACCCTTTTATCTCGTCTTCACCATCCCAATGTTATAAAGTTAGTAGCAGCTGTGAAAAAGCCACCTGTTTATTGCATCATCACTGAGTATCTACCTCAGGGTTCCTTGAGGGCATATCTTCACAAACTAGAGAAAAAATCTCTCCCATTGCAAAAACAAATTGCCATTGCCTTAGACATTGCTCGTGGGATGGAATACATTCACTCGCAAGGTGTCATTCATCGGGATCTCAAACCTGAAAACATTCTTATTGATGAAAACTTCTGTCTAAAGATTGCCGATTTCGGCATTGCTTGTGAGGAGGCACATTGTGATACACTGGCCGAGGACCCTGGAACTTTCCGTTGGATGGCCCCGGAAATGATCAAACGCAAACCCTATGGAAGAAAGGTTGATATCTACAGCTTTGGACTAATCTTATGGGAATTGGTAGCTGGAAAAATCCCTTATGAGGATATGACTCCAATCCAAGCAGCTTTTGCAGTTGTAGATAAGAATATTAGACCGGTCATACCGAGCGAGTGTCCTTCAGTGATACGGGCGTTAATCGAGCAATGCTGGTGTGAGAAACCAGAAAAGAGGTTGGAGTTTTGGCAGGTGGTGAAAGTGTTGGAGCAAATTGAGAGTTGTATTGGGGGAGATGGTACATTGATGATGAGTGTAGAGTTACAGGGGAAGGCAAGTTGGGAAGATCACAAGAAAGGTTTAAAGCATTGGATACAGAAGCTTGGTCCTCTTAATTCTCATAATTCTCTCAACTCCTCTAGAGCTAAATTCATATGA 1431 42.35 MEEDPNSWLRRTNFSHTICYRLESLSLASFPVTTQSPPKPAVQSKPNPCYNLTKQRSLSPSPQTKLSSAFKDARIDQKRFSTPQPQRKEPLKEKSKRLFSKRAKVQNSLKEEKLKRPLRHLVSFKGNEKLKFKDSSWSKLFEHGGGKVTAVEAVDELSIDLSKLMFGHRFAFGAHSRLYHGIYEDKVVAAKMINLPANDENGDLAGRLVKQFGREVTLLSRLHHPNVIKLVAAVKKPPVYCIITEYLPQGSLRAYLHKLEKKSLPLQKQIAIALDIARGMEYIHSQGVIHRDLKPENILIDENFCLKIADFGIACEEAHCDTLAEDPGTFRWMAPEMIKRKPYGRKVDIYSFGLILWELVAGKIPYEDMTPIQAAFAVVDKNIRPVIPSECPSVIRALIEQCWCEKPEKRLEFWQVVKVLEQIESCIGGDGTLMMSVELQGKASWEDHKKGLKHWIQKLGPLNSHNSLNSSRAKFI 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21400507 21403495 + MELO3C002609.2.1 Cme12g01341 344558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01341 476 SMART serkin_6 164 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01341 476 SUPERFAMILY Protein kinase-like (PK-like) 153 420 IPR011009 -
Cme12g01341 476 Gene3D Phosphorylase Kinase; domain 1 152 247 - -
Cme12g01341 476 ProSiteProfiles Protein kinase domain profile. 164 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01341 476 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 3 447 - -
Cme12g01341 476 PANTHER TYROSINE KINASE FAMILY PROTEIN 3 447 - -
Cme12g01341 476 MobiDBLite consensus disorder prediction 31 97 - -
Cme12g01341 476 Pfam Protein tyrosine and serine/threonine kinase 168 420 IPR001245 GO:0004672|GO:0006468
Cme12g01341 476 MobiDBLite consensus disorder prediction 71 96 - -
Cme12g01341 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Cme12g01341 476 PRINTS Tyrosine kinase catalytic domain signature 244 257 IPR001245 GO:0004672|GO:0006468
Cme12g01341 476 PRINTS Tyrosine kinase catalytic domain signature 282 300 IPR001245 GO:0004672|GO:0006468
Cme12g01341 476 PRINTS Tyrosine kinase catalytic domain signature 328 338 IPR001245 GO:0004672|GO:0006468
Cme12g01341 476 PRINTS Tyrosine kinase catalytic domain signature 347 369 IPR001245 GO:0004672|GO:0006468
Cme12g01341 476 PRINTS Tyrosine kinase catalytic domain signature 391 413 IPR001245 GO:0004672|GO:0006468
Cme12g01341 476 MobiDBLite consensus disorder prediction 31 70 - -
Cme12g01341 476 Gene3D Transferase(Phosphotransferase) domain 1 248 454 - -
Cme12g01341 476 CDD STKc_MAP3K-like 171 420 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme08g00439 Cme-Chr8:2697311 Cme12g01341 Cme-Chr12:21400507 5.96E-106 dispersed
Cme09g01827 Cme-Chr9:22567099 Cme12g01341 Cme-Chr12:21400507 2.41E-26 dispersed
Cme12g01341 Cme-Chr12:21400507 Cme12g01699 Cme-Chr12:23877706 3.06E-80 dispersed
Cme12g01341 Cme-Chr12:21400507 Cme08g00296 Cme-Chr8:1888947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65315 PF07714 PK_Tyr_Ser-Thr 6.60E-59 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01341 - - csv:101222817 920.228