Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01344 ATGGGCGCAATCAAACTCCAAATTCTCCTTCTCTCTTTCCCCCTTCTTCTCTTCTCTTCCATTTCCTCCCTCGATTTCCTCTTCAATGGATTCAATTCAACCAACATCTCCCTCTACGGCAACGCTACCATCGATTCCTCATTCATCGCTCTCACCAACCAAACCGGTTTCTCCATCGGCCGTGCTCTCTTCCCTTCCAAAATTCCCACTAAATCCCCCAATTCCTCTTCCCTTCTCCCTTTCTCCACTTCCTTCATCTTCGCTATGGCTCCTTACAGGGACGTCCTTCCTGGGCATGGCTTAGTTTTCATATGCGTTCCGACTACCGGAATCGACGGAACTGCTGCTGCTCAGAATTTGGGGTTTCTTAACTTCACCCTTAATGGAAACCCTAATAACCATGTCTTTGGAGTTGAGTTCGATGTTTTTGAGAATGAGGAATTCAACGATCCCGATGATAATCATGTTGGAATCAACTTGAATTCCTTGACGTCTTTTGTCACCGAAGAAGCTGGGTTTTGGTCTGACGGTGGTTCGAGTGCGGCAGATTCGCTCAACAGAGTTAGGCTTAATAGCGGCGAAAATTATCAGGTTTGGATTGACTATTCCGATTTCGTGATGAATGTTACGATGGCTCCGGCGGGGATGAAGAAGCCGCGAAGGCCGTTGATTAATACGTCTCTGAATCTCTCTGGAATTTTCATGGATGAAATGTATATGGGATTCACGAGTTCAACAGGGCAGTTGGTTCAAGGTCATAACATTTTAGCTTGGAGTTTCAGTAACACTAATTTTTCATTGAGTGAGAGTTTGATCACCACTGGATTACCCTCCTTCGTCCTCCCAAAAGACCCAATTACCAAATCGAAGTGGTTCATCGCCGGAGTGACAGCCGGCGGATTCCTCGTCGTTTGTTTCTTCGCCACGATTTTAGGGATTTTGATCGCCGACCACCGGAGAAAAGTGAGGTTAAGAGCCGAAATGGAAGATTGGGAATTAGAGTATTGGCCACACCGACTGACATATCAAGAAATCGAATCGGCAACGAAAGGATTTGCAGAAGAAAACGTGATAGGAATCGGAGGGAATGGGAAAGTATATAAAGGGATTTTGGCTGGAGGAAGTTCAGAAGTTGCCGTGAAACGAATCTCTCACGACAACGACGGGATGCGTGAATTCTTAGCTGAAATCTCAAGCATCGGAAGATTAAAACACAGAAATCTTGTAAGTTTGAAGGGTTGGTGTAAAAAAGAGAAGGGAAATTTCTTGCTGGTTTACGATTTCATGGAAAATGGAAGCTTAGACAAATGGGTTTTTGATTGTGATGAGAGAAACATGTTGAGTTGCGAGGATCGAATCAGAGTATTGAAGAACGTAGCCACAGGGGTTTTGTATTTACACGAAGGATGGGAATCAAAGGTTCTTCATAGAGACATAAAAGCTAGCAATGTGCTGTTAGACAAGGACATGAATGGAAGGCTAGGAGATTTCGGGTTAGCTCGAGTCCACGGTCACGGTCAAGTTGCAAGCACAACTCGAGTCGTAGGCACAATGGGTTACATAGCACCCGAGTTGATTCGAACGGGACGAGCCTCAACTCAATCAGACATCTTTGGTTTTGGTGTTTTGATTTTAGAAGTGATGTGTGGGAGGAGGCCAATAGAGGAAGGGAAGCCGCCATTGGTGGATTGGGTTCGGCGGTTGGCCGTTGAAGGGGAGATTACAGCAGCGCTTGACGACAGGCTAAGGAAGAAGGGTGGGTGGAACGAGGAGGAAGTGGAGAGAGTAATGCATTTGGGATTGGTTTGTGCGCATGTTGACCCGACCACTCGGCCGACGATGAGGCAAATTGTGAAGGTTTTTGAAGGGAAGATCGAGATGGATGAGAGTGAGAGTGAGAGTATGAATGCTTATTTGCTTCAAAGATTGAAGTCAGAAGGAATGATGTGTGATTCAGGTGTTGGTTTTGGCAAAAAATTGCATCCAACATTTGAGGATTTTCTTCAATCTTATTCAACTTCACTCTCTTGGTCCAATTCTTCTATCACCGGCAGGTGA 2058 45.38 MGAIKLQILLLSFPLLLFSSISSLDFLFNGFNSTNISLYGNATIDSSFIALTNQTGFSIGRALFPSKIPTKSPNSSSLLPFSTSFIFAMAPYRDVLPGHGLVFICVPTTGIDGTAAAQNLGFLNFTLNGNPNNHVFGVEFDVFENEEFNDPDDNHVGINLNSLTSFVTEEAGFWSDGGSSAADSLNRVRLNSGENYQVWIDYSDFVMNVTMAPAGMKKPRRPLINTSLNLSGIFMDEMYMGFTSSTGQLVQGHNILAWSFSNTNFSLSESLITTGLPSFVLPKDPITKSKWFIAGVTAGGFLVVCFFATILGILIADHRRKVRLRAEMEDWELEYWPHRLTYQEIESATKGFAEENVIGIGGNGKVYKGILAGGSSEVAVKRISHDNDGMREFLAEISSIGRLKHRNLVSLKGWCKKEKGNFLLVYDFMENGSLDKWVFDCDERNMLSCEDRIRVLKNVATGVLYLHEGWESKVLHRDIKASNVLLDKDMNGRLGDFGLARVHGHGQVASTTRVVGTMGYIAPELIRTGRASTQSDIFGFGVLILEVMCGRRPIEEGKPPLVDWVRRLAVEGEITAALDDRLRKKGGWNEEEVERVMHLGLVCAHVDPTTRPTMRQIVKVFEGKIEMDESESESMNAYLLQRLKSEGMMCDSGVGFGKKLHPTFEDFLQSYSTSLSWSNSSITGR 685
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21440636 21442788 - MELO3C002606.2.1 Cme12g01344 344561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01344 685 Pfam Legume lectin domain 24 265 IPR001220 GO:0030246
Cme12g01344 685 Gene3D Transferase(Phosphotransferase) domain 1 429 644 - -
Cme12g01344 685 ProSiteProfiles Protein kinase domain profile. 352 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01344 685 Gene3D - 21 270 - -
Cme12g01344 685 PANTHER - 7 677 - -
Cme12g01344 685 Gene3D Phosphorylase Kinase; domain 1 315 428 - -
Cme12g01344 685 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Cme12g01344 685 CDD STKc_IRAK 358 623 - -
Cme12g01344 685 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01344 685 CDD lectin_legume_LecRK_Arcelin_ConA 26 263 IPR001220 GO:0030246
Cme12g01344 685 SUPERFAMILY Protein kinase-like (PK-like) 330 621 IPR011009 -
Cme12g01344 685 Pfam Protein kinase domain 353 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01344 685 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Cme12g01344 685 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VII.1 7 677 - -
Cme12g01344 685 SUPERFAMILY Concanavalin A-like lectins/glucanases 22 268 IPR013320 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme01g00326 Cme-Chr1:2465318 Cme12g01344 Cme-Chr12:21440636 1.64E-96 dispersed
Cme09g00090 Cme-Chr9:677916 Cme12g01344 Cme-Chr12:21440636 1.02E-138 dispersed
Cme12g01344 Cme-Chr12:21440636 Cme04g02643 Cme-Chr4:32182873 1.76E-156 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65316 PF00069 Pkinase 1.30E-47 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01344 - - csv:101222577 1255.74