Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01365 ATGAGTTGCACCTGCTTCGGTTCCTCTACTTTGGAGAAGAAACGAATCTCTATACGTGCTGATAAGGAATTGGACATCGACTTGCCTGAGAATGTAAAACAAATCTCCTTCAATGAACTAAGATCTGCTTCGGACGATTTCCATTCGAGCAATAGAATTGGACGAGGAGGTTTTGGAACTGTTTACAAGGGCACATTAAGGAATGGCGTACAGGTTGCGATAAAGAAACTCTCTATAGAGTCTAAGCAAGGCGCTCGCGAATTTTTGACTGAGATCAAAACCATTTCAAATATTAGGCATCCTAACCTTGTTGAGTTGATTGGATGCTGTTCTCAAAAAGCTAACCGGATCTTGGTATATGAATATCTGGAAAACAACAGTCTCGACCATGCTTTGTTAGATCCTAAAAAAACAAGCGTCCACCTGGATTGGGGGAAGAGGTCCTCTATTTGCATTGGTACTGCTAGGGGTCTTCAATTTCTTCACGAGGAAGCCGTTCCACATATTGTGCATAGAGACATCAAGGCTAGTAATATACTCCTTGATAAAGACTTCAACCCGAAAATTGGTGACTTTGGATTAGCCAAACTTTTCCCAGATGATATTACTCACATTAGCACAAGAATTGCAGGAACAACTGGTTATTTGGCTCCAGAGTATGCATTGGGAGGTCAACTAACTCTGAAGGCTGATGTGTATAGCTTTGGAGTCCTCATCCTTGAAATTGTTAGTGGTAAACGTAGCAGTACAGTTTTTGGGGTAGAAATATCAGTACTCTTGCTGGGAAGGGTGTGGGAGTTATACGAAGAAGGAAAACTCTTGGATATAGTGGATCCCAGACTAGGAGATTACCCTCAGGAAGAAGTGCTTAGGTACATGAAAGTGGCTCTTTTTTGCACACAAGCAGCTGCAAATCGACGGCCAGCAATGAGCCAAGTCATTGACATGCTCACAAAGAATATCAAGCTGAATGAGAAGCTACTTACTGCCCCGGGGTTCTACGGAGGCTTGGGGACTAGTGACATTCCTTCAGTGAGCAAGAAGACCTCGAACGCTTCCACTAGCAACGAGATGAGCTTTGCAGGCATCTCCATAACTAAAATCACTCCCAGATGA 1116 43.19 MSCTCFGSSTLEKKRISIRADKELDIDLPENVKQISFNELRSASDDFHSSNRIGRGGFGTVYKGTLRNGVQVAIKKLSIESKQGAREFLTEIKTISNIRHPNLVELIGCCSQKANRILVYEYLENNSLDHALLDPKKTSVHLDWGKRSSICIGTARGLQFLHEEAVPHIVHRDIKASNILLDKDFNPKIGDFGLAKLFPDDITHISTRIAGTTGYLAPEYALGGQLTLKADVYSFGVLILEIVSGKRSSTVFGVEISVLLLGRVWELYEEGKLLDIVDPRLGDYPQEEVLRYMKVALFCTQAAANRRPAMSQVIDMLTKNIKLNEKLLTAPGFYGGLGTSDIPSVSKKTSNASTSNEMSFAGISITKITPR 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21574748 21584715 + MELO3C002587.2.1 Cme12g01365 344582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01365 371 PANTHER - 1 352 - -
Cme12g01365 371 ProSitePatterns Protein kinases ATP-binding region signature. 53 76 IPR017441 GO:0005524
Cme12g01365 371 SUPERFAMILY Protein kinase-like (PK-like) 30 317 IPR011009 -
Cme12g01365 371 Gene3D Transferase(Phosphotransferase) domain 1 123 329 - -
Cme12g01365 371 SMART serkin_6 47 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01365 371 CDD STKc_IRAK 53 319 - -
Cme12g01365 371 ProSiteProfiles Protein kinase domain profile. 47 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cme12g01365 371 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Cme12g01365 371 Pfam Protein tyrosine and serine/threonine kinase 49 316 IPR001245 GO:0004672|GO:0006468
Cme12g01365 371 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 352 - -
Cme12g01365 371 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme04g02712 Cme-Chr4:32554892 Cme12g01365 Cme-Chr12:21574748 1.41E-153 dispersed
Cme08g02317 Cme-Chr8:30122970 Cme12g01365 Cme-Chr12:21574748 1.18E-111 dispersed
Cme12g01365 Cme-Chr12:21574748 Cme07g01343 Cme-Chr7:18904904 1.28E-103 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65317 PF07714 PK_Tyr_Ser-Thr 2.40E-46 CL0016 Cme PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01365 - - csv:101207026 708.368