Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cme12g01397 | ATGAACGATTTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAAGCATATCTGGACAGCATGGAGGCTGGAAATGAGAGTGTAAATTTGGACAGGTTCTTTGAGGATGTTGAAAATGTTAAAGATGACATGAAACAAGTGGAGAATTTGTACAAGAAATTGCAGCAGGCTAATGAGGAGTGTAAGGTTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGGCTGATGTTGCTCAAGTTCTCAAGCGAGTCAAATTGATCAAAGGAAAGCTCGAAGCTCTTGAGCGTTCTAATGCCGCTCACCGTGGCCTCCCCGGTTGTGGCCCTGGCTCTTCTGCTGACCGAACTCGAACCTCTGTTGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAATGCCGAGTATAAAGAAACCGTCGAGCGAAGGTACTTCACAGTGACAGGGCAGAAAGCAAATGAAGAAACAATAGAGAATTTGATATCAAGTGGGGAAAGTGAGAGCTTCCTACAGAAGGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGACACAATTTCGGAGATTCAAGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTGATAGAGCTGCATCAGATTTTCTTGGACATGGCAGCTTTAGTTGAAGCTCAAGGCCACCAACTGAACGACATCGAAAGCCATGTCGCGCACGCTAACTCGTTCGTTAGAAGAGGAACAGAACAACTCCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATACTTTTGGGAGCTATTCTTATTATCGTTCTTCTCTTCCCACTATTAACTTCAATTTTACCTCATTTGTTGTAG | 912 | 43.97 | MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKVVHNAKTMKELRGRMEADVAQVLKRVKLIKGKLEALERSNAAHRGLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAILLGAILIIVLLFPLLTSILPHLL | 303 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 21851130 | 21852388 | - | MELO3C002559.2.1 | Cme12g01397 | 344614 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cme12g01397 | 303 | Gene3D | - | 33 | 160 | - | - | |
| Cme12g01397 | 303 | PANTHER | SYNTAXIN | 6 | 295 | IPR045242 | - | |
| Cme12g01397 | 303 | CDD | SNARE_syntaxin1-like | 202 | 264 | - | - | |
| Cme12g01397 | 303 | Pfam | Syntaxin | 35 | 238 | IPR006011 | GO:0016020 | |
| Cme12g01397 | 303 | PANTHER | SYNTAXIN-124-RELATED | 6 | 295 | - | - | |
| Cme12g01397 | 303 | CDD | SynN | 33 | 190 | IPR006011 | GO:0016020 | |
| Cme12g01397 | 303 | SUPERFAMILY | t-snare proteins | 32 | 258 | IPR010989 | GO:0016020|GO:0016192 | |
| Cme12g01397 | 303 | Gene3D | - | 193 | 295 | - | - | |
| Cme12g01397 | 303 | ProSitePatterns | Syntaxin / epimorphin family signature. | 209 | 248 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
| Cme12g01397 | 303 | SMART | tSNARE_6 | 198 | 265 | IPR000727 | - | |
| Cme12g01397 | 303 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 203 | 265 | IPR000727 | - | |
| Cme12g01397 | 303 | Pfam | SNARE domain | 240 | 291 | IPR000727 | - | |
| Cme12g01397 | 303 | Coils | Coil | 33 | 70 | - | - | |
| Cme12g01397 | 303 | SMART | SynN_4 | 28 | 154 | IPR006011 | GO:0016020 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cme06g02454 | Cme-Chr6:31570340 | Cme12g01397 | Cme-Chr12:21851130 | 4.21E-11 | dispersed | |
| Cme08g01151 | Cme-Chr8:8134579 | Cme12g01397 | Cme-Chr12:21851130 | 2.12E-115 | dispersed | |
| Cme08g02007 | Cme-Chr8:25241527 | Cme12g01397 | Cme-Chr12:21851130 | 2.24E-100 | dispersed | |
| Cme11g00777 | Cme-Chr11:9709170 | Cme12g01397 | Cme-Chr12:21851130 | 1.47E-68 | dispersed | |
| Cme12g01397 | Cme-Chr12:21851130 | Cme04g02317 | Cme-Chr4:30097548 | 7.04E-120 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cme12g01397 | K08486 | - | csv:101217140 | 576.244 |