Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cme12g01397 ATGAACGATTTATTCTCGAACTCGTTCAAGAAGTACACGGATCTGAAGCAACAAGCATATCTGGACAGCATGGAGGCTGGAAATGAGAGTGTAAATTTGGACAGGTTCTTTGAGGATGTTGAAAATGTTAAAGATGACATGAAACAAGTGGAGAATTTGTACAAGAAATTGCAGCAGGCTAATGAGGAGTGTAAGGTTGTGCATAATGCCAAGACAATGAAGGAGCTGAGGGGCCGAATGGAGGCTGATGTTGCTCAAGTTCTCAAGCGAGTCAAATTGATCAAAGGAAAGCTCGAAGCTCTTGAGCGTTCTAATGCCGCTCACCGTGGCCTCCCCGGTTGTGGCCCTGGCTCTTCTGCTGACCGAACTCGAACCTCTGTTGTCAGCGGCTTGGGAAAGAAGCTCAAAGATGTTATGGATGATTTTCAAGGCCTTAGAGCTCGAATGAATGCCGAGTATAAAGAAACCGTCGAGCGAAGGTACTTCACAGTGACAGGGCAGAAAGCAAATGAAGAAACAATAGAGAATTTGATATCAAGTGGGGAAAGTGAGAGCTTCCTACAGAAGGCAATTCAAGAACAGGGTAGAGGTCAAATAATGGACACAATTTCGGAGATTCAAGAACGACATGACGCTGTGAAGGAAATAGAGAAGAATTTGATAGAGCTGCATCAGATTTTCTTGGACATGGCAGCTTTAGTTGAAGCTCAAGGCCACCAACTGAACGACATCGAAAGCCATGTCGCGCACGCTAACTCGTTCGTTAGAAGAGGAACAGAACAACTCCAAGAAGCCAGAGAGTATCAAAAGAGCTCAAGGAAATGGACTTGCTATGCCATACTTTTGGGAGCTATTCTTATTATCGTTCTTCTCTTCCCACTATTAACTTCAATTTTACCTCATTTGTTGTAG 912 43.97 MNDLFSNSFKKYTDLKQQAYLDSMEAGNESVNLDRFFEDVENVKDDMKQVENLYKKLQQANEECKVVHNAKTMKELRGRMEADVAQVLKRVKLIKGKLEALERSNAAHRGLPGCGPGSSADRTRTSVVSGLGKKLKDVMDDFQGLRARMNAEYKETVERRYFTVTGQKANEETIENLISSGESESFLQKAIQEQGRGQIMDTISEIQERHDAVKEIEKNLIELHQIFLDMAALVEAQGHQLNDIESHVAHANSFVRRGTEQLQEAREYQKSSRKWTCYAILLGAILIIVLLFPLLTSILPHLL 303
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 21851130 21852388 - MELO3C002559.2.1 Cme12g01397 344614
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cme12g01397 303 Gene3D - 33 160 - -
Cme12g01397 303 PANTHER SYNTAXIN 6 295 IPR045242 -
Cme12g01397 303 CDD SNARE_syntaxin1-like 202 264 - -
Cme12g01397 303 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Cme12g01397 303 PANTHER SYNTAXIN-124-RELATED 6 295 - -
Cme12g01397 303 CDD SynN 33 190 IPR006011 GO:0016020
Cme12g01397 303 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Cme12g01397 303 Gene3D - 193 295 - -
Cme12g01397 303 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cme12g01397 303 SMART tSNARE_6 198 265 IPR000727 -
Cme12g01397 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Cme12g01397 303 Pfam SNARE domain 240 291 IPR000727 -
Cme12g01397 303 Coils Coil 33 70 - -
Cme12g01397 303 SMART SynN_4 28 154 IPR006011 GO:0016020
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cme06g02454 Cme-Chr6:31570340 Cme12g01397 Cme-Chr12:21851130 4.21E-11 dispersed
Cme08g01151 Cme-Chr8:8134579 Cme12g01397 Cme-Chr12:21851130 2.12E-115 dispersed
Cme08g02007 Cme-Chr8:25241527 Cme12g01397 Cme-Chr12:21851130 2.24E-100 dispersed
Cme11g00777 Cme-Chr11:9709170 Cme12g01397 Cme-Chr12:21851130 1.47E-68 dispersed
Cme12g01397 Cme-Chr12:21851130 Cme04g02317 Cme-Chr4:30097548 7.04E-120 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cme12g01397 K08486 - csv:101217140 576.244